OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/fowler-lab/sbmlcore",4 "url": "https://github.com/fowler-lab/sbmlcore",5 "host": "github.com",6 "commit": "06cb4c360d0cb42dd95f99945f652522bcac588f",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE",13 "sha256": "065fe3bdf61d5ffeef07d885b85b26439f33d53aad457962712606634a912361",14 "language": "License",15 "lines": 21,16 "truncated": false,17 "block": 10,18 "row": 608419 },20 {21 "path": "README.md",22 "sha256": "f20661f1cae0cdda446fdbda834381f09f1d71ee34f190f4b9c06749a932e3a4",23 "language": "Text",24 "lines": 50,25 "truncated": false,26 "block": 10,27 "row": 1983628 },29 {30 "path": "docs/source/conf.py",31 "sha256": "d191d81426003ae14000a200e1beab21d9469bb3f3a58f2a958c0b847fbb55db",32 "language": "Python",33 "lines": 55,34 "truncated": false,35 "block": 10,36 "row": 1179437 },38 {39 "path": "sbmlcore/AminoAcidProperties.py",40 "sha256": "6ec57fe4ce31e639c8521ecaa1af0dd7603f5e49c0779d1e173dc63425a89b53",41 "language": "Python",42 "lines": 358,43 "truncated": false,44 "block": 10,45 "row": 1592646 },47 {48 "path": "sbmlcore/DeepDDG.py",49 "sha256": "4b4dd03abab6d03a592f9b99be5faad323d5a959b14cb43bf719120ec3c1aeee",50 "language": "Python",51 "lines": 98,52 "truncated": false,53 "block": 10,54 "row": 1316655 },56 {57 "path": "sbmlcore/ExternalCode.py",58 "sha256": "5f81d4ddc767f40362ebc0ae99a24e1c985e19dff6e17773948e68ef89497ec2",59 "language": "Python",60 "lines": 490,61 "truncated": false,62 "block": 10,63 "row": 1651664 },65 {66 "path": "sbmlcore/FeaturesDataFrame.py",67 "sha256": "80838bcbca2b6ad7f96bc71a230120f81aba6debd31edf2a5b772f7b536878c1",68 "language": "Python",69 "lines": 82,70 "truncated": false,71 "block": 10,72 "row": 1210173 },74 {75 "path": "sbmlcore/Misc.py",76 "sha256": "d29f3317d4d9ce101cdc27fbfda8108a3306ba2cc9f7955017c6625e22432534",77 "language": "Python",78 "lines": 28,79 "truncated": false,80 "block": 10,81 "row": 1013782 },83 {84 "path": "sbmlcore/RaSP.py",85 "sha256": "e7a6d7ff258f8fb894830a531faf0ec955528fb48c255d2bfc22e016946d3ba1",86 "language": "Python",87 "lines": 79,88 "truncated": false,89 "block": 10,90 "row": 1276691 },92 {93 "path": "sbmlcore/ResidueDepth.py",94 "sha256": "96353aadc6154f36cc3acfb0c5bd68e5f9c89ae7e888ede40c866dc1fa4be9e9",95 "language": "Python",96 "lines": 86,97 "truncated": false,98 "block": 10,99 "row": 12510100 },101 {102 "path": "sbmlcore/StructuralDistances.py",103 "sha256": "4e94ce438ef977f25f565d5d05a5aaa9b9ecc3f2d8316b6e0f60138e3e494c0f",104 "language": "Python",105 "lines": 187,106 "truncated": false,107 "block": 10,108 "row": 14662109 },110 {111 "path": "sbmlcore/TempFactors.py",112 "sha256": "e25d44c209308d75d52155a42522d276aa72754c90cda3d31a67ba4b90319ffa",113 "language": "Python",114 "lines": 115,115 "truncated": false,116 "block": 10,117 "row": 13384118 },119 {120 "path": "sbmlcore/TrajectoryDihedrals.py",121 "sha256": "931fc8c965d5094e0b49eeb403f4f46f5075b51cc61f5a49703b5d77edc12a1d",122 "language": "Python",123 "lines": 454,124 "truncated": false,125 "block": 10,126 "row": 16523127 },128 {129 "path": "sbmlcore/TrajectoryDistances.py",130 "sha256": "c2e7c71bcaa76f4b853081b731f6293c08c5227b17c462df7165f2a43c5a274c",131 "language": "Python",132 "lines": 281,133 "truncated": false,134 "block": 10,135 "row": 15474136 },137 {138 "path": "sbmlcore/__init__.py",139 "sha256": "737f6a60e8fbcdf3cc00741a06c40bead15f3b3abfb67456a362d178f9e301b8",140 "language": "Python",141 "lines": 72,142 "truncated": false,143 "block": 10,144 "row": 12274145 },146 {147 "path": "tests/__init__.py",148 "sha256": "9024f757e0927d71bc6e221d91657d165a7c3ea9761addade91fcfcc94fffd1d",149 "language": "Python",150 "lines": 1,151 "truncated": false,152 "block": 10,153 "row": 9605154 },155 {156 "path": "tests/test_MDAnalysis.py",157 "sha256": "4114b951cb5560720d68b3fc55affed378d3039eaf539f073d82c9873cf7790f",158 "language": "Python",159 "lines": 10,160 "truncated": false,161 "block": 10,162 "row": 9912163 },164 {165 "path": "tests/test_MW.py",166 "sha256": "a9b3457ee161ee012ec6666816f29f4ed8316d12498993b307787b6525cc682d",167 "language": "Python",168 "lines": 26,169 "truncated": false,170 "block": 10,171 "row": 10517172 },173 {174 "path": "tests/test_Pi.py",175 "sha256": "75027b54542e2619bb57f93cdfb6484cba75b6de2a141e10b06f38fddaf320b1",176 "language": "Python",177 "lines": 26,178 "truncated": false,179 "block": 10,180 "row": 10525181 },182 {183 "path": "tests/test_aminoacidvolumechange.py",184 "sha256": "67192a5e6a0516380d0dc9e2371e533bb6bd1d6085e4c27511cd9aa331eddb12",185 "language": "Python",186 "lines": 26,187 "truncated": false,188 "block": 10,189 "row": 10558190 },191 {192 "path": "tests/test_deep_ddg.py",193 "sha256": "5691ffa399deb09efe72793d349447882bc1f48cd7796c52c42a919fcbf8a816",194 "language": "Python",195 "lines": 94,196 "truncated": false,197 "block": 10,198 "row": 13103199 },200 {201 "path": "tests/test_dssp.py",202 "sha256": "08877728a9464e460edfafa31b6c040494f8b70e73c8de2eb3d7fe024f97da33",203 "language": "Python",204 "lines": 60,205 "truncated": false,206 "block": 10,207 "row": 11438208 },209 {210 "path": "tests/test_freesasa.py",211 "sha256": "c452a341406c5ebb29888b833d71d4cba0492ec5131c1c4c7055f9ea6d607eaf",212 "language": "Python",213 "lines": 55,214 "truncated": false,215 "block": 10,216 "row": 12157217 },218 {219 "path": "tests/test_hydropathy.py",220 "sha256": "aff61f4566c3cb3b519954490cd74d5da44104f36c51c45f9779ad07f8fb7e0b",221 "language": "Python",222 "lines": 47,223 "truncated": false,224 "block": 10,225 "row": 11456226 },227 {228 "path": "tests/test_modernization.py",229 "sha256": "19d115589d3caf7d41c6ceacbb25b4073b2a12ffa76dab0f52dd89328edcef37",230 "language": "Python",231 "lines": 76,232 "truncated": false,233 "block": 10,234 "row": 11938235 },236 {237 "path": "tests/test_rasp.py",238 "sha256": "150845476227a70240dc57d74c32c0762bdfe93337327939d818b497c110431e",239 "language": "Python",240 "lines": 29,241 "truncated": false,242 "block": 10,243 "row": 10431244 },245 {246 "path": "tests/test_residuedepth.py",247 "sha256": "f5e5d7d303c15686fdf4e8cb16b67807401047bb6dcd2f534c56b1e25e73000f",248 "language": "Python",249 "lines": 13,250 "truncated": false,251 "block": 10,252 "row": 10033253 },254 {255 "path": "tests/test_rogov.py",256 "sha256": "bd367877c19abfc1d0942429a839325d037aba0c18ed1875952e37676e18ac03",257 "language": "Python",258 "lines": 16,259 "truncated": false,260 "block": 10,261 "row": 10060262 },263 {264 "path": "tests/test_snap2.py",265 "sha256": "553b2aa92a6f552f002a1ee1cce98a4dc772f02bfcd36133530caa08039900fe",266 "language": "Python",267 "lines": 53,268 "truncated": false,269 "block": 10,270 "row": 11753271 },272 {273 "path": "tests/test_stride.py",274 "sha256": "07c69d9fa3baf820b3d5d7ab52baf3ed5ac351a407e21310db29bab1630440d1",275 "language": "Python",276 "lines": 43,277 "truncated": false,278 "block": 10,279 "row": 11013280 },281 {282 "path": "tests/test_structuraldistances.py",283 "sha256": "f9a4f76552e1f36b94e324d63364a6eb7d20d69b75837d3360f42350d76ba65e",284 "language": "Python",285 "lines": 55,286 "truncated": false,287 "block": 10,288 "row": 12453289 },290 {291 "path": "tests/test_tempfactor.py",292 "sha256": "01d8b9291959c439327bc29b398250511708e2b0bbc3a1f4113761b6d443ca29",293 "language": "Python",294 "lines": 28,295 "truncated": false,296 "block": 10,297 "row": 10416298 },299 {300 "path": "tests/test_trajectorydihedrals.py",301 "sha256": "fde50460dd6515303c74dedc220b62effacfeb7d0784cc713899e17f9eeeb177",302 "language": "Python",303 "lines": 324,304 "truncated": false,305 "block": 10,306 "row": 15352307 },308 {309 "path": "tests/test_trajectorydistances.py",310 "sha256": "59cf4bb25467cbd72a1b58d7b64cf7acd1890bab2d0956b803ccb96dde3acfaf",311 "language": "Python",312 "lines": 228,313 "truncated": false,314 "block": 10,315 "row": 14448316 }317 ]318}