Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__ivanjalid1__hsv1-crispr-escape.json255 linesDownload Raw Back to f7
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/ivanjalid1/hsv1-crispr-escape",4 "url": "https://github.com/ivanjalid1/hsv1-crispr-escape",5 "host": "github.com",6 "commit": "4e99d6931094e5a7930772da1d56bd75ca003678",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "0e8c2c1ec37b30145fd0d48b7303d2e5b1c2aac0f5699f4a13fa859ee42e4848",14   "language": "License",15   "lines": 21,16   "truncated": false,17   "block": 14,18   "row": 1703019  },20  {21   "path": "README.md",22   "sha256": "c582a4af9d41a174b9398ecac27da400bb412484865425cb99c69ea4bdfdde4d",23   "language": "Text",24   "lines": 1335,25   "truncated": false,26   "block": 16,27   "row": 775228  },29  {30   "path": "manuscript/build_pdf.py",31   "sha256": "371be8a9cab779f9eb83cd51ee7c1264ce6a193e2a924c20e01704ce9d364266",32   "language": "Python",33   "lines": 783,34   "truncated": false,35   "block": 16,36   "row": 31537  },38  {39   "path": "manuscript/verify_pdf.py",40   "sha256": "94eff9dc5fa4d2b9268889122c0ecb0942cc27f846961007736de891b97456d9",41   "language": "Python",42   "lines": 292,43   "truncated": false,44   "block": 15,45   "row": 2265546  },47  {48   "path": "run_pipeline.py",49   "sha256": "d45e61be93478bdd785b8a2c3a694799c835df24ca8940c6c1a4f32f5291da9a",50   "language": "Python",51   "lines": 421,52   "truncated": false,53   "block": 15,54   "row": 2490855  },56  {57   "path": "src/__init__.py",58   "sha256": "3e9fe363d2de8dd9425595edf6a899368cd3b501bb24addb25850f32cc75c5b5",59   "language": "Python",60   "lines": 3,61   "truncated": false,62   "block": 15,63   "row": 568164  },65  {66   "path": "src/benchmark_sacas9.py",67   "sha256": "f60522500e624c85c7562137a4b27b0ae655bc9ee91fe92b1da9d829a916c64c",68   "language": "Python",69   "lines": 1149,70   "truncated": false,71   "block": 16,72   "row": 132873  },74  {75   "path": "src/common.py",76   "sha256": "d9d7e66a4f0e4d4fed3b6aca4305a8e609cadfac3fafdbcb6d304fa706c8a95a",77   "language": "Python",78   "lines": 250,79   "truncated": false,80   "block": 15,81   "row": 2028282  },83  {84   "path": "src/conservation.py",85   "sha256": "a21ce9441cc11bde3af25f786b182fc913295056579d6e6c873ed59a369aaf38",86   "language": "Python",87   "lines": 330,88   "truncated": false,89   "block": 15,90   "row": 2363191  },92  {93   "path": "src/escape.py",94   "sha256": "f4fff9062cb2f31e7a85a768e61c536164e6decc728fbb3f6ff521dfda162630",95   "language": "Python",96   "lines": 2784,97   "truncated": false,98   "block": 16,99   "row": 1761100  },101  {102   "path": "src/extract_guides.py",103   "sha256": "cbbfa51d95adf5627a165dc68242f8f376ed0bde4e98c25e97a91fcde0e61b4f",104   "language": "Python",105   "lines": 376,106   "truncated": false,107   "block": 15,108   "row": 24082109  },110  {111   "path": "src/fetch_genomes.py",112   "sha256": "673c4b3a19eefcf04642a43ce9bfd7b5892feb0eb70094768b27b3a5dc7421f8",113   "language": "Python",114   "lines": 458,115   "truncated": false,116   "block": 15,117   "row": 24668118  },119  {120   "path": "src/figures.py",121   "sha256": "2bfc9bd05e0bbbd3af5ca16303657913df77094ec561d1337582161d38e6bf5a",122   "language": "Python",123   "lines": 1155,124   "truncated": false,125   "block": 16,126   "row": 1243127  },128  {129   "path": "src/nuclease.py",130   "sha256": "3cd773ee94c07ed78fe7641d8cca73a799febd77daa7dbf29d663331edf5cef2",131   "language": "Python",132   "lines": 306,133   "truncated": false,134   "block": 15,135   "row": 22797136  },137  {138   "path": "src/offtarget.py",139   "sha256": "62d5c098482a92e72755761f8fcadf732fb1bfe13bf316937ec098e741466a6b",140   "language": "Python",141   "lines": 1972,142   "truncated": false,143   "block": 16,144   "row": 1629145  },146  {147   "path": "src/reconcile.py",148   "sha256": "fa30a9c45053c3acb03d1c69f5e93d75bbf476318d59f250d1dc830f282291a6",149   "language": "Python",150   "lines": 356,151   "truncated": false,152   "block": 15,153   "row": 24417154  },155  {156   "path": "src/report.py",157   "sha256": "6a74ee83eaad5a68ce42375257f76a40d6532445173bcc06dac7635426d6e07d",158   "language": "Python",159   "lines": 192,160   "truncated": false,161   "block": 15,162   "row": 20074163  },164  {165   "path": "src/robustness.py",166   "sha256": "b6e4e595c4ae3907c9004cddf214c7f9a80ecdfdf361ce4cfcbf65c5c1936b53",167   "language": "Python",168   "lines": 1952,169   "truncated": false,170   "block": 16,171   "row": 1623172  },173  {174   "path": "tests/test_benchmark.py",175   "sha256": "48b5086122062873ca671f63cd9f91b6f6d79f3834244a1bcd03bd3f758644e3",176   "language": "Python",177   "lines": 185,178   "truncated": false,179   "block": 15,180   "row": 20017181  },182  {183   "path": "tests/test_core.py",184   "sha256": "4bb52c2982ddeaac7d5302cdad4c7787be021a7d95b2c03738bcea7aadf03e9a",185   "language": "Python",186   "lines": 129,187   "truncated": false,188   "block": 15,189   "row": 16458190  },191  {192   "path": "tests/test_escape.py",193   "sha256": "599fde820fa64fbff687fb282db8f15c0bce0f370a5974981499f3578ade04ca",194   "language": "Python",195   "lines": 733,196   "truncated": false,197   "block": 16,198   "row": 553199  },200  {201   "path": "tests/test_figures.py",202   "sha256": "ccaaefa3b8c2ebeb7436f52b5bae4b872a25386a0aef3000b1412db0cd92692f",203   "language": "Python",204   "lines": 470,205   "truncated": false,206   "block": 15,207   "row": 25227208  },209  {210   "path": "tests/test_nuclease.py",211   "sha256": "2990618f1854bd70f26c03c4cf2f05ee91a60d5a03810ea6c6d6d8511e038835",212   "language": "Python",213   "lines": 377,214   "truncated": false,215   "block": 15,216   "row": 24317217  },218  {219   "path": "tests/test_offtarget.py",220   "sha256": "f408cf324806fb93dfd4faec833a3f74ab972aa2a4a81627d8fc7c60e80363f8",221   "language": "Python",222   "lines": 494,223   "truncated": false,224   "block": 15,225   "row": 25225226  },227  {228   "path": "tests/test_reconcile.py",229   "sha256": "cdbe9ed8cdf5a1f09e64ca2c8a7019015ede71624ce7cf2841d0a1a15170c852",230   "language": "Python",231   "lines": 184,232   "truncated": false,233   "block": 15,234   "row": 20316235  },236  {237   "path": "tests/test_robustness.py",238   "sha256": "173a9e718ce768521146728bebfae5f318ccd5de0cc2c8fed28cf3e53f3e84d2",239   "language": "Python",240   "lines": 435,241   "truncated": false,242   "block": 15,243   "row": 24602244  },245  {246   "path": "verify.py",247   "sha256": "5dc9c2acf2b843b42a03e082f432c8d43164d0f8fdd5bd0e33d73be79d5c51bf",248   "language": "Python",249   "lines": 483,250   "truncated": false,251   "block": 15,252   "row": 25635253  }254 ]255}