Team Ai
Datasetpublic

OpenScientificCodeRegistry/Database

Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.

sourceHugging Faceotherupdated 2d agoView on Hugging Face
0likes5.6kdownloads
github.com__carlson-lab__lpne.json552 linesDownload Raw Back to fb
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/carlson-lab/lpne",4 "url": "https://github.com/carlson-lab/lpne",5 "host": "github.com",6 "commit": "5d1e31b6689c0575ef2e617d5452dbf9822b98b4",7 "license": "MIT",8 "license_confirmed_by": "license file LICENSE.md",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE.md",13   "sha256": "fce3e4d5af9e12e37958595f2fb88e6c887e870afebd3c3d98280af5b3fdfe03",14   "language": "License",15   "lines": 7,16   "truncated": false,17   "block": 14,18   "row": 1676219  },20  {21   "path": "README.md",22   "sha256": "ff4fe97da265707a4b2c2c1e1d14042ec1b068153102416948ddd5beb4c376a6",23   "language": "Text",24   "lines": 51,25   "truncated": false,26   "block": 16,27   "row": 704828  },29  {30   "path": "apps/feature_app/main.py",31   "sha256": "f92f46b5a070d688f25e896b36043d9b28fa5c0dcd65fbac2df63507b8dd1ca2",32   "language": "Python",33   "lines": 463,34   "truncated": false,35   "block": 15,36   "row": 2369737  },38  {39   "path": "apps/label_editing_app/main.py",40   "sha256": "0db993d6fe56589620e6e4ae36f4c48b072b164ea0221d7fb2226888f5b40fbf",41   "language": "Python",42   "lines": 566,43   "truncated": false,44   "block": 15,45   "row": 2465146  },47  {48   "path": "apps/project_app/main.py",49   "sha256": "0fb11fdfad279ebfa971154ca60542f25d0b4102977fa1ea0ee1c57c1b9ddea8",50   "language": "Python",51   "lines": 407,52   "truncated": false,53   "block": 15,54   "row": 2353955  },56  {57   "path": "apps/sleep_app/main.py",58   "sha256": "9949c75b79e4d58ab70f8861f288a61d64514d6e2463133dc31de5c12afe0d9b",59   "language": "Python",60   "lines": 725,61   "truncated": false,62   "block": 15,63   "row": 2549564  },65  {66   "path": "apps/wave_app/main.py",67   "sha256": "200ad0211d44caf1a15a9acb383621d12d5ff499a4b30c728ac30f4a2a0ef787",68   "language": "Python",69   "lines": 101,70   "truncated": false,71   "block": 15,72   "row": 1267873  },74  {75   "path": "docs/source/conf.py",76   "sha256": "3442e98f76f35ff621652efa8123ad42c4bba84a8e8d3a04006713f379f50107",77   "language": "Python",78   "lines": 72,79   "truncated": false,80   "block": 15,81   "row": 1169382  },83  {84   "path": "example_bispec_plot.py",85   "sha256": "ea1ebbf5c4b155517f2676428cf7f665a7f0c175eca39eedbc1540c905102b50",86   "language": "Python",87   "lines": 66,88   "truncated": false,89   "block": 15,90   "row": 1007291  },92  {93   "path": "example_movie.py",94   "sha256": "ceaf7cae1d8428c8c64f3921b4199cc16f923d4d58b286d81c30da1a2bd5c473",95   "language": "Python",96   "lines": 61,97   "truncated": false,98   "block": 15,99   "row": 8975100  },101  {102   "path": "examples/tst/feature_pipeline_tst.py",103   "sha256": "9437389ba6d16b16461fd1fef7194c41e7f1baaab318231e137bed99ccbdb5df",104   "language": "Python",105   "lines": 116,106   "truncated": false,107   "block": 15,108   "row": 14616109  },110  {111   "path": "examples/tst/prediction_pipeline_tst.py",112   "sha256": "bb7996d6d2b457cb084313e990aeeb96b8b4165af1abee1d3fc856f83c488735",113   "language": "Python",114   "lines": 149,115   "truncated": false,116   "block": 15,117   "row": 16167118  },119  {120   "path": "hmp_example_code.py",121   "sha256": "5bbd738203d81220cc3c23704b1145501296cdc57b02053ca45759a074a6663d",122   "language": "Python",123   "lines": 53,124   "truncated": false,125   "block": 15,126   "row": 9286127  },128  {129   "path": "lpne/__init__.py",130   "sha256": "f42bc8a046f1676a5cae570034c83c18776501aae86a3141e2a82c0befdb4fff",131   "language": "Python",132   "lines": 74,133   "truncated": false,134   "block": 15,135   "row": 9756136  },137  {138   "path": "lpne/models/__init__.py",139   "sha256": "02db982a37e5e7baa5fd493b9cfea8fa2d3bec136929bb7a28189ce341b7eaa8",140   "language": "Python",141   "lines": 27,142   "truncated": false,143   "block": 15,144   "row": 6478145  },146  {147   "path": "lpne/models/base_model.py",148   "sha256": "7f064492089cc042be7ec1f9427431ca7fbbbba93af610b303848b208f78755a",149   "language": "Python",150   "lines": 284,151   "truncated": false,152   "block": 15,153   "row": 21562154  },155  {156   "path": "lpne/models/cp_sae.py",157   "sha256": "202627574e1de44b6b51a1d372dd916242b7f427086d0b83c5d1636182386642",158   "language": "Python",159   "lines": 532,160   "truncated": false,161   "block": 15,162   "row": 24838163  },164  {165   "path": "lpne/models/dcsfa_nmf.py",166   "sha256": "cd98010973cea8cfe1d6e14f24c1aba53eebacf8a9cca0bd10c9b14da78e43a5",167   "language": "Python",168   "lines": 978,169   "truncated": false,170   "block": 16,171   "row": 739172  },173  {174   "path": "lpne/models/factor_analysis_sae.py",175   "sha256": "c1b4e18177a111b0ec7fc905ab73c82df00b9807ef949ef16adea6c479b0e830",176   "language": "Python",177   "lines": 572,178   "truncated": false,179   "block": 15,180   "row": 25232181  },182  {183   "path": "lpne/models/grid_search_cv.py",184   "sha256": "9c385047c04b2072626e5407b63fc04dbc0cc0a8c2596584ae8fc36059da82df",185   "language": "Python",186   "lines": 198,187   "truncated": false,188   "block": 15,189   "row": 18683190  },191  {192   "path": "lpne/models/model_utils.py",193   "sha256": "1c7faa70c5f8f1024462e4114ed80b844183bd60f7706909709acd7f90ff58c1",194   "language": "Python",195   "lines": 116,196   "truncated": false,197   "block": 15,198   "row": 14007199  },200  {201   "path": "lpne/models/nmf_base.py",202   "sha256": "a63867bf1570e3fadc81c994f45808877edde1f2f5d3c9e3be8ef9eadd6bf9e9",203   "language": "Python",204   "lines": 536,205   "truncated": false,206   "block": 15,207   "row": 24929208  },209  {210   "path": "lpne/pipelines/__init__.py",211   "sha256": "231272b9cec9b4b5e5757a32df6ad17f97d5789754b7bcb05f9faa3fb37fbca8",212   "language": "Python",213   "lines": 8,214   "truncated": false,215   "block": 15,216   "row": 5894217  },218  {219   "path": "lpne/pipelines/pipeline_params.py",220   "sha256": "9afc23a5d6132e99e11e4c1753cbbfc027d741d4909ab0719670c93828f0403b",221   "language": "Python",222   "lines": 82,223   "truncated": false,224   "block": 15,225   "row": 10210226  },227  {228   "path": "lpne/pipelines/standard_pipeline.py",229   "sha256": "28536afadbb0602bd486c5ddda8f5b6d98be05169938da218d267242367f4734",230   "language": "Python",231   "lines": 204,232   "truncated": false,233   "block": 15,234   "row": 19759235  },236  {237   "path": "lpne/plotting/__init__.py",238   "sha256": "b9d2a8df8dacea1917d10b3a46ad5f8864acc189ba774b1af0132320d24c9577",239   "language": "Python",240   "lines": 14,241   "truncated": false,242   "block": 15,243   "row": 6521244  },245  {246   "path": "lpne/plotting/circle_plot.py",247   "sha256": "eb7264d05e9ff98efb0bdf545264291c550b5af697db6978a56b9465e1417269",248   "language": "Python",249   "lines": 280,250   "truncated": false,251   "block": 15,252   "row": 21169253  },254  {255   "path": "lpne/plotting/plot_bispec.py",256   "sha256": "2d303c788803056cbccf60b3588a227e750acf0ba0da000794950af41b79c7f9",257   "language": "Python",258   "lines": 81,259   "truncated": false,260   "block": 15,261   "row": 11016262  },263  {264   "path": "lpne/plotting/plot_db.py",265   "sha256": "12654a03643f9736f0071628a16934c90d78d0314403894c4a2f0f96d293b31a",266   "language": "Python",267   "lines": 194,268   "truncated": false,269   "block": 15,270   "row": 18953271  },272  {273   "path": "lpne/plotting/plot_factor.py",274   "sha256": "d1e8cc4c20e95da8f27ca6c1d3fe52cf36779181155ddc6438acf4d8667d6847",275   "language": "Python",276   "lines": 107,277   "truncated": false,278   "block": 15,279   "row": 13194280  },281  {282   "path": "lpne/plotting/plot_lfps.py",283   "sha256": "70f236fa5cae3723f6bc5b1711ce5edc2755cf37ccec1baa9e9a7674c7b4602f",284   "language": "Python",285   "lines": 202,286   "truncated": false,287   "block": 15,288   "row": 18913289  },290  {291   "path": "lpne/plotting/plot_power.py",292   "sha256": "1ab13df74beb9041c0126cc98686368ffd6877dd267d41690485af90ed9114d3",293   "language": "Python",294   "lines": 68,295   "truncated": false,296   "block": 15,297   "row": 10636298  },299  {300   "path": "lpne/plotting/plot_spec.py",301   "sha256": "c06a7dff9dac0d2f66718569b9923769c718b06fecd3f3dfa51fa557802ff926",302   "language": "Python",303   "lines": 105,304   "truncated": false,305   "block": 15,306   "row": 11598307  },308  {309   "path": "lpne/plotting/power_movie.py",310   "sha256": "fcaf31f4f4bfc1c2bb20e5e141d631bf58a002fe812996b55b943c91bbc92a23",311   "language": "Python",312   "lines": 277,313   "truncated": false,314   "block": 15,315   "row": 20791316  },317  {318   "path": "lpne/plotting/simplex_plot.py",319   "sha256": "19768851eec76f10007b5326585ceb465d175d3b36322087940ce7b30c815cec",320   "language": "Python",321   "lines": 75,322   "truncated": false,323   "block": 15,324   "row": 10916325  },326  {327   "path": "lpne/preprocess/bispectrum.py",328   "sha256": "241447813dde00302f3d2dbf296db84f96740541f6d80aea5126fa06b3bdbacf",329   "language": "Python",330   "lines": 227,331   "truncated": false,332   "block": 15,333   "row": 19851334  },335  {336   "path": "lpne/preprocess/channel_maps.py",337   "sha256": "d857c8211cef9583ccd07eb2be7a2d646fa3c881964eca59bbf777e77c2a432b",338   "language": "Python",339   "lines": 347,340   "truncated": false,341   "block": 15,342   "row": 22012343  },344  {345   "path": "lpne/preprocess/directed_measures.py",346   "sha256": "29ac42ab389696576bf5fd9ac4261d85eaadcda7ba28abd081ca73a0408cd482",347   "language": "Python",348   "lines": 350,349   "truncated": false,350   "block": 15,351   "row": 23174352  },353  {354   "path": "lpne/preprocess/filter.py",355   "sha256": "7921056bd98eba57e336ca2e25ca4f362394071f5073393e0fea28e0e0aa763c",356   "language": "Python",357   "lines": 115,358   "truncated": false,359   "block": 15,360   "row": 12669361  },362  {363   "path": "lpne/preprocess/make_features.py",364   "sha256": "8da1efbfc21287ebab34bf0f694dc86ad95a3a333e8510d25236927509f76ec9",365   "language": "Python",366   "lines": 223,367   "truncated": false,368   "block": 15,369   "row": 19657370  },371  {372   "path": "lpne/preprocess/normalize.py",373   "sha256": "0ae8f3ff3dbced71cc9db30f6f58d77adde044e295ebbb04692ce80c9ffa5594",374   "language": "Python",375   "lines": 110,376   "truncated": false,377   "block": 15,378   "row": 14048379  },380  {381   "path": "lpne/preprocess/outlier_detection.py",382   "sha256": "364d78150b412ddf3eb1c28342b132b936d262e2abdff9c33cd9fd453f1bf5d8",383   "language": "Python",384   "lines": 68,385   "truncated": false,386   "block": 15,387   "row": 10040388  },389  {390   "path": "lpne/preprocess/phase_slope_index.py",391   "sha256": "114d11e736303023f418182be5a38e7ce8901397893555e1c6aa3c8268577ad6",392   "language": "Python",393   "lines": 138,394   "truncated": false,395   "block": 15,396   "row": 15525397  },398  {399   "path": "lpne/utils/array_utils.py",400   "sha256": "f57eafed43feccc174b90bf6542b12011c84af2991a5cbdfb19b0a4c245e56f1",401   "language": "Python",402   "lines": 283,403   "truncated": false,404   "block": 15,405   "row": 21238406  },407  {408   "path": "lpne/utils/data.py",409   "sha256": "b7c9a312046bf128fd9c3a1a04840e8130b3ce05379d46585ee335425a04a642",410   "language": "Python",411   "lines": 392,412   "truncated": false,413   "block": 15,414   "row": 22950415  },416  {417   "path": "lpne/utils/file_utils.py",418   "sha256": "5817918a0a0ae098aab34acba82225a76ec5b5c9d2def7e35e9e0dc5ac4d5518",419   "language": "Python",420   "lines": 364,421   "truncated": false,422   "block": 15,423   "row": 22637424  },425  {426   "path": "lpne/utils/utils.py",427   "sha256": "8a710f969185fbbdb6e7385a8f15af873beee5f6e4b740320e2b4d3da8ae7161",428   "language": "Python",429   "lines": 188,430   "truncated": false,431   "block": 15,432   "row": 17491433  },434  {435   "path": "lpne/utils/viterbi.py",436   "sha256": "1222ad74a78c025c34e14739aa7b60d97eabcf7fda0c0ad190931dcc7580238e",437   "language": "Python",438   "lines": 161,439   "truncated": false,440   "block": 15,441   "row": 17660442  },443  {444   "path": "script.py",445   "sha256": "eb7d6735455f18890247aa762dbc06443bc690765a41d3463e717b3b13ab8d97",446   "language": "Python",447   "lines": 32,448   "truncated": false,449   "block": 15,450   "row": 7044451  },452  {453   "path": "setup.py",454   "sha256": "a2c1098220a0b611c6ed430c60ee6f14d2fbd1635b2eb89380b12c3958234abe",455   "language": "Python",456   "lines": 21,457   "truncated": false,458   "block": 15,459   "row": 7104460  },461  {462   "path": "test/test_array.py",463   "sha256": "72dbd825b0f065bed3407117cb1ec087332edf2038be7f3cf14f8ec6c0444381",464   "language": "Python",465   "lines": 28,466   "truncated": false,467   "block": 15,468   "row": 7128469  },470  {471   "path": "test/test_bispectrum.py",472   "sha256": "6fee6dcb9c715a8c57df1946e54ab2b6432ea7669c17f0d5002504be74337f2b",473   "language": "Python",474   "lines": 53,475   "truncated": false,476   "block": 15,477   "row": 8889478  },479  {480   "path": "test/test_channel_maps.py",481   "sha256": "cc89d3b3920925bdf8d9a99b78cd035ec1b29961fa07ff10c940c2bf6b813e38",482   "language": "Python",483   "lines": 96,484   "truncated": false,485   "block": 15,486   "row": 11845487  },488  {489   "path": "test/test_data.py",490   "sha256": "94f3438cef6464423eb9fa9a16937594b2a479f0576c61341d2418f045d5c7fe",491   "language": "Python",492   "lines": 29,493   "truncated": false,494   "block": 15,495   "row": 6979496  },497  {498   "path": "test/test_directed_measures.py",499   "sha256": "ba5d3d912ab3797812ca5d1b256fcfcbbae185827f35170e40820f3d26ee1710",500   "language": "Python",501   "lines": 51,502   "truncated": false,503   "block": 15,504   "row": 9318505  },506  {507   "path": "test/test_make_features.py",508   "sha256": "9a28ff6f380e025233a3bcfd8bd9c18d0cbfe959ae6d9da3b52fabfb69797fe9",509   "language": "Python",510   "lines": 49,511   "truncated": false,512   "block": 15,513   "row": 8666514  },515  {516   "path": "test/test_models.py",517   "sha256": "8bf7f91493eadcc8670eee56455462470d7ecbbed00dffa15f54620342f11846",518   "language": "Python",519   "lines": 89,520   "truncated": false,521   "block": 15,522   "row": 11624523  },524  {525   "path": "test/test_utils.py",526   "sha256": "1ce287d02d1a80ad77cdf0852fa2334c3af8d16168c94b3afd4a9c8665f28ba7",527   "language": "Python",528   "lines": 81,529   "truncated": false,530   "block": 15,531   "row": 12220532  },533  {534   "path": "test/test_viterbi.py",535   "sha256": "b0102651c3586cc7f8049ebdbb32bdc34784432bf8bb89fd0c732eb60828c07b",536   "language": "Python",537   "lines": 46,538   "truncated": false,539   "block": 15,540   "row": 9266541  },542  {543   "path": "test/test_wilson.py",544   "sha256": "c3cb74323016f08d6e6336b419d73fb9e57dde9a8b770018702ed1ae52c29ba2",545   "language": "Python",546   "lines": 44,547   "truncated": false,548   "block": 15,549   "row": 8182550  }551 ]552}