OpenScientificCodeRegistry/Database
Open Scientific Code Registry (OSCR): the authors' scripts The code published by the authors of open-access neuroscience papers, as found and verified by Open Scientific Code Registry (OSCR). Each file is here exactly as it is at the source, at the verified commit, under the license of its repository. 421,275 unique files (3,782 MB of text) from 8,849 repositories, in 24 Parquet block(s). Only files whose repository's license allows redistribution, confirmed by the repository's… See the full description on the dataset page: https://huggingface.co/datasets/OpenScientificCodeRegistry/Database.
05.6k
1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/neuroecology/mrcat",4 "url": "http://github.com/neuroecology/MrCat",5 "host": "github.com",6 "commit": "f86d4e14e1ba7aad44dcc3947931b432d46ac52f",7 "license": "BSD-3-Clause",8 "license_confirmed_by": "license file LICENSE.md",9 "redistribution": "yes",10 "files": [11 {12 "path": "LICENSE.md",13 "sha256": "3bb51eef9c269cbc05c5735b21ec94ef5712d9fa00debf39dac3b2bf6b0ddfb9",14 "language": "License",15 "lines": 5,16 "truncated": false,17 "block": 6,18 "row": 200619 },20 {21 "path": "README.md",22 "sha256": "f539eb81ecd3dd9313a47b430ae419330007a1ada5f156b11da67e21c68e748a",23 "language": "Text",24 "lines": 9,25 "truncated": false,26 "block": 8,27 "row": 979028 },29 {30 "path": "core/Coord2ROI.sh",31 "sha256": "ae4f32f43c4622becb62fa9c30d67d717c01647f8e165c9290934dc1d5bfc1fd",32 "language": "Shell",33 "lines": 435,34 "truncated": false,35 "block": 8,36 "row": 938037 },38 {39 "path": "core/ExpandMotionConfounds.m",40 "sha256": "8b6114a060c4c2ddcacf80373bc604174f8f5bbfcbcf56bd1f39535e3a5f5436",41 "language": "MATLAB",42 "lines": 45,43 "truncated": false,44 "block": 6,45 "row": 756746 },47 {48 "path": "core/FixNegVal.sh",49 "sha256": "6af32fb9a85781630196c85503d7bab35e0b3d734a1a94e21ce8ca06274d034e",50 "language": "Shell",51 "lines": 136,52 "truncated": false,53 "block": 8,54 "row": 893955 },56 {57 "path": "core/GMM_fdt.m",58 "sha256": "d0846dd97b87e12607dd2b2664c03a7b31b785082b4d5cb3496339fae8e86d7e",59 "language": "MATLAB",60 "lines": 370,61 "truncated": false,62 "block": 6,63 "row": 1802964 },65 {66 "path": "core/GMWMborder.sh",67 "sha256": "551a9bbd3eb3c0d178e192f274ec1d8412db7c75a4f07d2beef1439f28a00296",68 "language": "Shell",69 "lines": 41,70 "truncated": false,71 "block": 8,72 "row": 753873 },74 {75 "path": "core/MIGP.m",76 "sha256": "a4139707ed7ccf4aebac14904edd31821c4ce6d781fb190d23fc91cafd14f4b0",77 "language": "MATLAB",78 "lines": 211,79 "truncated": false,80 "block": 6,81 "row": 1588182 },83 {84 "path": "core/MIGP_legacy_20170215.m",85 "sha256": "77c9d9c924c95630cc72b3fc6a2dff09360807ac97801c9094a618a2f26a6878",86 "language": "MATLAB",87 "lines": 101,88 "truncated": false,89 "block": 6,90 "row": 1191291 },92 {93 "path": "core/RobustBiasCorr.sh",94 "sha256": "7b92a48f962bd977b405d6b580cc7b3993a2011f3631ce320414394667f220b8",95 "language": "Shell",96 "lines": 273,97 "truncated": false,98 "block": 8,99 "row": 9334100 },101 {102 "path": "core/Wrapper_phoenix.sh",103 "sha256": "c8f2ca55f0b89f401c3e7debd1da78d0150aa8fec522ed4dc794643cbb23770a",104 "language": "Shell",105 "lines": 95,106 "truncated": false,107 "block": 8,108 "row": 8938109 },110 {111 "path": "core/addParam.m",112 "sha256": "db8f9e00d1044743c1281a2eda79cd714b60b6e9ee8cb7d95a0fa6a327b0e14c",113 "language": "MATLAB",114 "lines": 49,115 "truncated": false,116 "block": 6,117 "row": 8940118 },119 {120 "path": "core/add_toolbox.m",121 "sha256": "e9a348fef7efa58c89a9be1fb28e30c4a754dc915f5a282cf48c54434cfe4bff",122 "language": "MATLAB",123 "lines": 111,124 "truncated": false,125 "block": 6,126 "row": 14279127 },128 {129 "path": "core/ap_calculateCC.m",130 "sha256": "df293ad7abd5b5f646a51ca1d2276822d18ae4cb91ad6384e8bc1f0c6f8c93d3",131 "language": "MATLAB",132 "lines": 86,133 "truncated": false,134 "block": 6,135 "row": 11538136 },137 {138 "path": "core/ap_cluster_dconn.m",139 "sha256": "bba21481d11c252775f001bc11e508a5de6ffd24c8727b4073e90beae49a5f92",140 "language": "MATLAB",141 "lines": 100,142 "truncated": false,143 "block": 6,144 "row": 13446145 },146 {147 "path": "core/ap_rearrangeCC.m",148 "sha256": "76d1866752a00ed290c0316393beac729b63e9b25f96a46afaca08468f36159c",149 "language": "MATLAB",150 "lines": 42,151 "truncated": false,152 "block": 6,153 "row": 8016154 },155 {156 "path": "core/apcluster.m",157 "sha256": "813e1cdf367f4818ea579faf4eb79f0db9fe9fbc53781f80ea049626786e225e",158 "language": "MATLAB",159 "lines": 269,160 "truncated": false,161 "block": 6,162 "row": 17692163 },164 {165 "path": "core/apclusterK.m",166 "sha256": "56fdb0f17c6e7fde206d128ace6c2fe26864b71193d484a0f65250ef4bbea38d",167 "language": "MATLAB",168 "lines": 89,169 "truncated": false,170 "block": 6,171 "row": 12083172 },173 {174 "path": "core/asymmetry.m",175 "sha256": "a0ee50e8aab6aee0b2a20010c42af2317b16c81ef0a608181a2ef92be8590695",176 "language": "MATLAB",177 "lines": 18,178 "truncated": false,179 "block": 6,180 "row": 4727181 },182 {183 "path": "core/bet_macaque.sh",184 "sha256": "3b79e3e8fc1f91c55fbce018bbfabed9a615be744e6499cb21db42c4427d6a1c",185 "language": "Shell",186 "lines": 433,187 "truncated": false,188 "block": 8,189 "row": 9373190 },191 {192 "path": "core/binarize.m",193 "sha256": "a9c96caf97395231e3d682e7bbcd2a92aa48e8e2124c69d1d2f24670c88a0d5d",194 "language": "MATLAB",195 "lines": 70,196 "truncated": false,197 "block": 6,198 "row": 10054199 },200 {201 "path": "core/cifti_open.m",202 "sha256": "a5ed236324f94b4746cfaf9ce664c1652274b9a5d372979b2936b9e73aa87748",203 "language": "MATLAB",204 "lines": 188,205 "truncated": false,206 "block": 6,207 "row": 16156208 },209 {210 "path": "core/ciftiopen.m",211 "sha256": "e645e6cab777c1131011baa4822060c15ae90f0128ed583e5d661ed864858cc1",212 "language": "MATLAB",213 "lines": 64,214 "truncated": false,215 "block": 6,216 "row": 11084217 },218 {219 "path": "core/clean_logdir.sh",220 "sha256": "f07d5ac56eed09a11918926eecaa98c1eeb3f9e30fae32cca4993f9dc406c1cc",221 "language": "Shell",222 "lines": 41,223 "truncated": false,224 "block": 8,225 "row": 7661226 },227 {228 "path": "core/cluster_threshold.m",229 "sha256": "b533278fa5c92c2f3a3dd851981d6152d26ce03db47179bbf6d8587655410794",230 "language": "MATLAB",231 "lines": 117,232 "truncated": false,233 "block": 6,234 "row": 12615235 },236 {237 "path": "core/columnentropy.m",238 "sha256": "27dfd44383a9d3634a4e4b999fa783d74a7412a0461360ee5c5e4d9d2f9c5257",239 "language": "MATLAB",240 "lines": 92,241 "truncated": false,242 "block": 6,243 "row": 10509244 },245 {246 "path": "core/conngrads_cc.m",247 "sha256": "07b23541af02b7f6f89b143d8fef482a38010ed7ea3b53197e108a5bbe6d4ed0",248 "language": "MATLAB",249 "lines": 32,250 "truncated": false,251 "block": 6,252 "row": 4949253 },254 {255 "path": "core/conngrads_dconn.m",256 "sha256": "02bccd31e047cd7f06c99912f353f7d18e0fa7e3f59dec086c72e9a1287e2fdc",257 "language": "MATLAB",258 "lines": 215,259 "truncated": false,260 "block": 6,261 "row": 16769262 },263 {264 "path": "core/conngrads_diff.m",265 "sha256": "f52776ee426ffe1beb0a7171a67c5a7bc2c86ee3c3947bfe618bfbda8e09ec3b",266 "language": "MATLAB",267 "lines": 60,268 "truncated": false,269 "block": 6,270 "row": 9547271 },272 {273 "path": "core/conngrads_eps.m",274 "sha256": "dca839e9ce0360ade3b42623bc5c7c0a0b30e52d96d1a345315445a698f5c398",275 "language": "MATLAB",276 "lines": 79,277 "truncated": false,278 "block": 6,279 "row": 9259280 },281 {282 "path": "core/conngrads_eta2.m",283 "sha256": "37f2f6995e1f8a864601e6ce122eaec9b0407058d410fa02cd4981402c7a2b8d",284 "language": "MATLAB",285 "lines": 45,286 "truncated": false,287 "block": 6,288 "row": 7683289 },290 {291 "path": "core/conngrads_euc.m",292 "sha256": "47d016dee21db01f85da89d308fb70224a6259c8c4c58e1e0bf60b8a3bbbfce8",293 "language": "MATLAB",294 "lines": 32,295 "truncated": false,296 "block": 6,297 "row": 5226298 },299 {300 "path": "core/conngrads_fdt.m",301 "sha256": "29904944978aa206853a473d818c4265cb5ffce628c2b0c442290e6de6bb5c6a",302 "language": "MATLAB",303 "lines": 275,304 "truncated": false,305 "block": 6,306 "row": 17554307 },308 {309 "path": "core/conngrads_gau.m",310 "sha256": "1634bfbc53df9cc61d867953133a73a90411bfdbdcc89bdfb22d9eefee890485",311 "language": "MATLAB",312 "lines": 27,313 "truncated": false,314 "block": 6,315 "row": 4799316 },317 {318 "path": "core/conngrads_knn.m",319 "sha256": "02eecb2fba6347f4521e12ab90a93dbca482466ccc12b752994cc8ebceeab2c9",320 "language": "MATLAB",321 "lines": 82,322 "truncated": false,323 "block": 6,324 "row": 10198325 },326 {327 "path": "core/conngrads_lap.m",328 "sha256": "4f73dc878db01fe2a8fcf7b20814afb0ec2d9dc5e2d616b632903fbfc62aad53",329 "language": "MATLAB",330 "lines": 35,331 "truncated": false,332 "block": 6,333 "row": 6149334 },335 {336 "path": "core/conngrads_proj_prep.m",337 "sha256": "c539db625069b2a85d5cd9662d127e86325fb1d56ba1e5d9885bfaeb150a853d",338 "language": "MATLAB",339 "lines": 59,340 "truncated": false,341 "block": 6,342 "row": 9208343 },344 {345 "path": "core/conngrads_ps.m",346 "sha256": "38b98fe710d39c819288fdef1acf7082b62cab564b1509054bf3e176607b242f",347 "language": "MATLAB",348 "lines": 32,349 "truncated": false,350 "block": 6,351 "row": 5210352 },353 {354 "path": "core/conngrads_sim.m",355 "sha256": "f67c26c47e47068514670f36ecb8a1e11e7d292ad695486cf2f10aa3836b5cc3",356 "language": "MATLAB",357 "lines": 50,358 "truncated": false,359 "block": 6,360 "row": 8829361 },362 {363 "path": "core/conngrads_sp.m",364 "sha256": "07c55fd0511e005d2acc536516c0242d5c6cab5cdc3b5ddfaab982987ac75de1",365 "language": "MATLAB",366 "lines": 53,367 "truncated": false,368 "block": 6,369 "row": 9181370 },371 {372 "path": "core/cosine_similarity.m",373 "sha256": "a7d67e7ef0467ddba57c9da7183c8f17d82e83e70d3cfd03b463c57aa3a990b9",374 "language": "MATLAB",375 "lines": 44,376 "truncated": false,377 "block": 6,378 "row": 7693379 },380 {381 "path": "core/create_func_gii.m",382 "sha256": "234d94a81dc49f37a25281c779885e4f15ba199b67d774880b77b32ac659f1e5",383 "language": "MATLAB",384 "lines": 73,385 "truncated": false,386 "block": 6,387 "row": 9721388 },389 {390 "path": "core/create_gifti.m",391 "sha256": "67b2aed05f1470a8d47282dc3da7f0628430550c91fc8de8637384cd42caac9e",392 "language": "MATLAB",393 "lines": 171,394 "truncated": false,395 "block": 6,396 "row": 16707397 },398 {399 "path": "core/create_multibrain_vol.m",400 "sha256": "a493110bc4110d69823de2d3c94e48f044a8ffed2507a9c0f65ac1d3bd0fc7e5",401 "language": "MATLAB",402 "lines": 73,403 "truncated": false,404 "block": 6,405 "row": 11638406 },407 {408 "path": "core/create_spec_file.m",409 "sha256": "5dcc37d75386bbdee0602711656204f28667b2169a0e10ffa1fdb4516c3dfe61",410 "language": "MATLAB",411 "lines": 57,412 "truncated": false,413 "block": 6,414 "row": 9740415 },416 {417 "path": "core/cut_outlier.sh",418 "sha256": "e4c5f9897c3d552d450b265c774a117f7ffeccec18a3d963347483ead08fd3cb",419 "language": "Shell",420 "lines": 303,421 "truncated": false,422 "block": 8,423 "row": 9299424 },425 {426 "path": "core/demean.m",427 "sha256": "28091f8b791408d29d47d4e058fb8d706d8d88bb6454d3d49def437795eeeee4",428 "language": "MATLAB",429 "lines": 37,430 "truncated": false,431 "block": 6,432 "row": 6518433 },434 {435 "path": "core/dice.m",436 "sha256": "9c89e3e6ed45f7206d9f2142da72381412117ab2e20ffc87cf9b76a1b0e356ca",437 "language": "MATLAB",438 "lines": 30,439 "truncated": false,440 "block": 6,441 "row": 5412442 },443 {444 "path": "core/erase.m",445 "sha256": "e3113fbc1ebf05e78d7a057187d392e5a716cb85de3aa6d646f35974bfd544c1",446 "language": "MATLAB",447 "lines": 46,448 "truncated": false,449 "block": 6,450 "row": 7491451 },452 {453 "path": "core/eta_template.m",454 "sha256": "71dd43c9455162486e9f220170fd1bd660ac25c99dc0d46d64f9ab2a45aa6a9e",455 "language": "MATLAB",456 "lines": 55,457 "truncated": false,458 "block": 6,459 "row": 8536460 },461 {462 "path": "core/euclid.m",463 "sha256": "146944c7e655f1ce0e7c89a2aab098a3a7a0944c21f7e0174b1a74f1b43d60ba",464 "language": "MATLAB",465 "lines": 53,466 "truncated": false,467 "block": 6,468 "row": 8222469 },470 {471 "path": "core/fisherz.m",472 "sha256": "0c8fa687a4c5ed9bb34b7d83c71f3c8ca4bc530928e51c3277ab9b307a55af57",473 "language": "MATLAB",474 "lines": 17,475 "truncated": false,476 "block": 6,477 "row": 3913478 },479 {480 "path": "core/get_gifti_type.m",481 "sha256": "0c32e036fafa5b55c46486992568d9e2c837982058e3aaf1116350a50679e76a",482 "language": "MATLAB",483 "lines": 40,484 "truncated": false,485 "block": 6,486 "row": 8483487 },488 {489 "path": "core/get_jointprobs.m",490 "sha256": "dea64704a9e22f15ed98f1401bf158526829c7a6eaf87290b184dc34fbbbd14d",491 "language": "MATLAB",492 "lines": 30,493 "truncated": false,494 "block": 6,495 "row": 6444496 },497 {498 "path": "core/ggfit.m",499 "sha256": "cd5a772005dd2445bf33bc2a78ffe401163f2bba35b6882cf82d8dd1daf2cdee",500 "language": "MATLAB",501 "lines": 112,502 "truncated": false,503 "block": 6,504 "row": 13326505 },506 {507 "path": "core/glass.m",508 "sha256": "e0c0426ac8362a86f924cf0d6f8409e6925e3b0fe89fe178691aff79c6c9a041",509 "language": "MATLAB",510 "lines": 228,511 "truncated": false,512 "block": 6,513 "row": 16091514 },515 {516 "path": "core/glass_projection.m",517 "sha256": "72b55937e68904acd33697196755b426556cc14f6b45b207f0c06bdbca70522d",518 "language": "MATLAB",519 "lines": 319,520 "truncated": false,521 "block": 6,522 "row": 17465523 },524 {525 "path": "core/hierarchicalclustering.m",526 "sha256": "0a1829daa1315617238c8008e21219e4d59188dd4800493e99a7a1a18b496f6c",527 "language": "MATLAB",528 "lines": 87,529 "truncated": false,530 "block": 6,531 "row": 11218532 },533 {534 "path": "core/inverse_fisherz.m",535 "sha256": "eadc9a3745ab4650d434e19eee232e790db51fd52f39a72901a0df83542a1576",536 "language": "MATLAB",537 "lines": 17,538 "truncated": false,539 "block": 6,540 "row": 3952541 },542 {543 "path": "core/islander_borgify.m",544 "sha256": "218ad97aee99789a8e6449521d869963320b334e2fc6af292d1ec0cd8aa12766",545 "language": "MATLAB",546 "lines": 61,547 "truncated": false,548 "block": 6,549 "row": 10482550 },551 {552 "path": "core/islander_colonize.m",553 "sha256": "54a106051d87d66af7e26e72d1133b5f64b950ef080187bbd7cd355216298bfd",554 "language": "MATLAB",555 "lines": 109,556 "truncated": false,557 "block": 6,558 "row": 13699559 },560 {561 "path": "core/jobID.sh",562 "sha256": "18b4fb9919b85578dfd5d342ea52452122d0e06061c8092fd8b944d3a87b0d19",563 "language": "Shell",564 "lines": 9,565 "truncated": false,566 "block": 8,567 "row": 7027568 },569 {570 "path": "core/jointentropy.m",571 "sha256": "fe84587910bc52b4b76ef9103f0490443f37080416a1b10dacfe1a986a4d2439",572 "language": "MATLAB",573 "lines": 47,574 "truncated": false,575 "block": 6,576 "row": 7500577 },578 {579 "path": "core/km_calculateCC.m",580 "sha256": "584ec1eedde8c487d8fae973a190942c002da801903b1e02dfae1b4bff685391",581 "language": "MATLAB",582 "lines": 83,583 "truncated": false,584 "block": 6,585 "row": 11151586 },587 {588 "path": "core/km_calculateD.m",589 "sha256": "2f95ef1ea6cf4a885d7058d6ae7a2993ef4db603e83e182deb16e291c0044b33",590 "language": "MATLAB",591 "lines": 115,592 "truncated": false,593 "block": 6,594 "row": 14130595 },596 {597 "path": "core/km_connexityconstraint_volume.m",598 "sha256": "8dd920a9a920820b03ee210020bb13a1868db9ce9d51fba09e6f1320d3cd39ed",599 "language": "MATLAB",600 "lines": 117,601 "truncated": false,602 "block": 6,603 "row": 13212604 },605 {606 "path": "core/km_hierarchyindex.m",607 "sha256": "bb9513321b3f5b21c6d08da7fc6b83647c3c3d5a6a2790195eddb1714c4eaa94",608 "language": "MATLAB",609 "lines": 134,610 "truncated": false,611 "block": 6,612 "row": 13401613 },614 {615 "path": "core/km_init.m",616 "sha256": "1144853d2b9940ac06535b28b1b101f2a509c279486d3965ebd8e2df4927effc",617 "language": "MATLAB",618 "lines": 137,619 "truncated": false,620 "block": 6,621 "row": 15419622 },623 {624 "path": "core/km_init_furthest.m",625 "sha256": "c67f5139493b2449859cf35506b7d0f72778a8b97de0fbffa70b1e4eb14d596b",626 "language": "MATLAB",627 "lines": 60,628 "truncated": false,629 "block": 6,630 "row": 9477631 },632 {633 "path": "core/km_init_kdtree.m",634 "sha256": "2441174cc47a199dd23afd77501cb84ab8ef84dd3003b5a1a17bf3a8b5e556c0",635 "language": "MATLAB",636 "lines": 133,637 "truncated": false,638 "block": 6,639 "row": 12817640 },641 {642 "path": "core/km_silhouette.m",643 "sha256": "efea9485049749ca1d4fdabf4bda81a59ec386d1ad773e629f3559d6bcf969ac",644 "language": "MATLAB",645 "lines": 97,646 "truncated": false,647 "block": 6,648 "row": 11408649 },650 {651 "path": "core/km_vi.m",652 "sha256": "ced374f8377224338db095af8c1cf91c3a5bcadf2c22f55fada9227455447583",653 "language": "MATLAB",654 "lines": 48,655 "truncated": false,656 "block": 6,657 "row": 7717658 },659 {660 "path": "core/kmeans_dconn.m",661 "sha256": "24351910bc73a4800a965b937562f6fbe7e80298b8e6ad5d9541d69725c6f833",662 "language": "MATLAB",663 "lines": 224,664 "truncated": false,665 "block": 6,666 "row": 16962667 },668 {669 "path": "core/kmeans_fast.m",670 "sha256": "0465a6795dab82a97fe529e54911570ea79e4f883e11db269c6d7227c5665eed",671 "language": "MATLAB",672 "lines": 181,673 "truncated": false,674 "block": 6,675 "row": 16371676 },677 {678 "path": "core/kmeans_fdt.m",679 "sha256": "a0f7cee7776543287f78e03b480c73d925dcfeda4b425b415c89b8200ea36076",680 "language": "MATLAB",681 "lines": 342,682 "truncated": false,683 "block": 6,684 "row": 17848685 },686 {687 "path": "core/line_trendline.m",688 "sha256": "e148310bc7564f60b9ce06ceb0000a9854b519544d809aed622cc739785ccbb7",689 "language": "MATLAB",690 "lines": 11,691 "truncated": false,692 "block": 6,693 "row": 2949694 },695 {696 "path": "core/load_gifti.m",697 "sha256": "fb82962fe995a8a3d9644f215f0d2b481c2b11c49dc81cf9951eb549dc8bb9d2",698 "language": "MATLAB",699 "lines": 505,700 "truncated": false,701 "block": 6,702 "row": 18803703 },704 {705 "path": "core/load_gifti_data.m",706 "sha256": "356ee21948f904a21ea7899564c40963573f9d23cf331a37c9fbe99cb3e7e288",707 "language": "MATLAB",708 "lines": 67,709 "truncated": false,710 "block": 6,711 "row": 11486712 },713 {714 "path": "core/load_xml.m",715 "sha256": "724a02ecbeeee495a6f7eef543a1d131506e4bf557c2fe5f3a1806a66f1eeedc",716 "language": "MATLAB",717 "lines": 39,718 "truncated": false,719 "block": 6,720 "row": 6839721 },722 {723 "path": "core/log_threshold.m",724 "sha256": "528bff8c46bbf9b2aba5f062906ea3d6bbce15d124b267a2599dae5be5d44711",725 "language": "MATLAB",726 "lines": 88,727 "truncated": false,728 "block": 6,729 "row": 11192730 },731 {732 "path": "core/look_at_moriarty.m",733 "sha256": "fd3496b73266164a5662379bf4500a092fb577a0e3437b0e1028ed643467f70c",734 "language": "MATLAB",735 "lines": 204,736 "truncated": false,737 "block": 6,738 "row": 17256739 },740 {741 "path": "core/mae.sh",742 "sha256": "50fb283c4c46b889b8b91b8066ef1103a16660965029ef9b830a47d6b4743c16",743 "language": "Shell",744 "lines": 109,745 "truncated": false,746 "block": 8,747 "row": 8776748 },749 {750 "path": "core/mahalanobis.m",751 "sha256": "081d5ab4f58ee668aa739561909a8f2727c68bb28daa2f34eec7598758d6f719",752 "language": "MATLAB",753 "lines": 37,754 "truncated": false,755 "block": 6,756 "row": 7187757 },758 {759 "path": "core/make_empty_gifti.m",760 "sha256": "b6994f19ae62d872a0b6f08afad8b4f28e9631b3380c2bc409f81925f9733106",761 "language": "MATLAB",762 "lines": 164,763 "truncated": false,764 "block": 6,765 "row": 16233766 },767 {768 "path": "core/manhattan.m",769 "sha256": "250d6b5dbeb5d1626587f08ab222440f341c44af73aa92c59e427dd7221ba571",770 "language": "MATLAB",771 "lines": 40,772 "truncated": false,773 "block": 6,774 "row": 7167775 },776 {777 "path": "core/maskmean.m",778 "sha256": "38fa9580008d6a34d32830d94e75057a1363cdcb7d94721a1386e73574d98033",779 "language": "MATLAB",780 "lines": 18,781 "truncated": false,782 "block": 6,783 "row": 3869784 },785 {786 "path": "core/maskmean_nonzero.m",787 "sha256": "c60ee183ef71388dc2c635ea75c4a0a005215fa6032fb4bf2c9656dae2d42ef6",788 "language": "MATLAB",789 "lines": 13,790 "truncated": false,791 "block": 6,792 "row": 3258793 },794 {795 "path": "core/mat2dtseries.m",796 "sha256": "399e0c8db1187abb3af48b4a9192e26538158574bb71a1d015fe089928109af9",797 "language": "MATLAB",798 "lines": 74,799 "truncated": false,800 "block": 6,801 "row": 12344802 },803 {804 "path": "core/moriarty2.m",805 "sha256": "3d0de52efe534634e5014efb37b5da71e443b4ba4dd8bee0b223a947a6c142b5",806 "language": "MATLAB",807 "lines": 178,808 "truncated": false,809 "block": 6,810 "row": 15486811 },812 {813 "path": "core/moriarty_ggm.m",814 "sha256": "eb3da8d8d6b122eec4ec467813df091a41ebe28fc8ce9deac19c73599f2c18f2",815 "language": "MATLAB",816 "lines": 106,817 "truncated": false,818 "block": 6,819 "row": 12950820 },821 {822 "path": "core/multiply_fdt.m",823 "sha256": "611cacf8990fa59c92b7f7c07dab0295e5be53a0077d83dd9908dc56ee2374c5",824 "language": "MATLAB",825 "lines": 199,826 "truncated": false,827 "block": 6,828 "row": 15954829 },830 {831 "path": "core/mutualinformation.m",832 "sha256": "7ea38404fe5d43155d6af6375699fa733c715e098a7f495620039af53daf51dd",833 "language": "MATLAB",834 "lines": 50,835 "truncated": false,836 "block": 6,837 "row": 8132838 },839 {840 "path": "core/mygfilter.m",841 "sha256": "61bf3f3b4724d76c3f15f6f7b7be2884d3f2720a4bec9afbf8451bc15d4fe0b8",842 "language": "MATLAB",843 "lines": 57,844 "truncated": false,845 "block": 6,846 "row": 8398847 },848 {849 "path": "core/normalise.m",850 "sha256": "39f3661130a57f0279f6c07fa8cb669dbb6deeba80bd956abfc33f5c99524ec8",851 "language": "MATLAB",852 "lines": 45,853 "truncated": false,854 "block": 6,855 "row": 6734856 },857 {858 "path": "core/normalize0.m",859 "sha256": "272f1f8e61a0bde7157db09b22a7020257f176eba2ea21f9f60c20af5f1a6a42",860 "language": "MATLAB",861 "lines": 22,862 "truncated": false,863 "block": 6,864 "row": 4941865 },866 {867 "path": "core/normalize1.m",868 "sha256": "bc362f5de4bbb2094311637a7c5b230dece3bdbe7bb87a20c2947576450521ba",869 "language": "MATLAB",870 "lines": 74,871 "truncated": false,872 "block": 6,873 "row": 10161874 },875 {876 "path": "core/partialcorrmatrix.m",877 "sha256": "61aac6852ce589e8079a1873b3b3a3fcfc6ac7e5830544fb30365d50586cc401",878 "language": "MATLAB",879 "lines": 123,880 "truncated": false,881 "block": 6,882 "row": 14085883 },884 {885 "path": "core/perm_results.m",886 "sha256": "cfa853c7c30251843928b1430e4e312637ecf37a7f86693e156f4fa403ef564a",887 "language": "MATLAB",888 "lines": 118,889 "truncated": false,890 "block": 6,891 "row": 12502892 },893 {894 "path": "core/plot_trendline.m",895 "sha256": "cba5154fce6464ce5be0a558699f043e4f4fb0163773168df1d429db248597e7",896 "language": "MATLAB",897 "lines": 27,898 "truncated": false,899 "block": 6,900 "row": 5359901 },902 {903 "path": "core/preferenceRange.m",904 "sha256": "9b90aa22d738b3a9cee3538b9d4fd56d1052fd5c943fd0cec9be10c5c57f7cba",905 "language": "MATLAB",906 "lines": 99,907 "truncated": false,908 "block": 6,909 "row": 12608910 },911 {912 "path": "core/quick_plot.m",913 "sha256": "53f7a6813cd343df356211cae3c4c971d739b9881030a180ef9f865912698c9e",914 "language": "MATLAB",915 "lines": 47,916 "truncated": false,917 "block": 6,918 "row": 8767919 },920 {921 "path": "core/randomize_vector.m",922 "sha256": "3dee01c8c057f885a111766cef0ea6241054ca4aa238333f45e27c10bd758b47",923 "language": "MATLAB",924 "lines": 26,925 "truncated": false,926 "block": 6,927 "row": 5100928 },929 {930 "path": "core/read_avw_multi.m",931 "sha256": "cdfa9d0590fdb895214b19b44377a8c69a935fc4d6da3f0afbebe7bda92dff59",932 "language": "MATLAB",933 "lines": 148,934 "truncated": false,935 "block": 6,936 "row": 15231937 },938 {939 "path": "core/read_fsl_design_matrix.m",940 "sha256": "a1e6f279afd0e7afbe3d3db4b7f7a5f5ca6eb8b67a4eb46789bbdf1e4a391370",941 "language": "MATLAB",942 "lines": 55,943 "truncated": false,944 "block": 6,945 "row": 9216946 },947 {948 "path": "core/readimgfile.m",949 "sha256": "a1c8905afd8cfc315b370bf2ad5f04d40df1cd7969a7abb050c5f5b5cb1b6426",950 "language": "MATLAB",951 "lines": 266,952 "truncated": false,953 "block": 6,954 "row": 17173955 },956 {957 "path": "core/registerT1wCT.sh",958 "sha256": "ec5d213e942930ab6774175a47badef3dcd4b3aa14967b864dc731911aac1081",959 "language": "Shell",960 "lines": 493,961 "truncated": false,962 "block": 8,963 "row": 9387964 },965 {966 "path": "core/register_EPI_T1.sh",967 "sha256": "a3319cbcab2e3f2ece0c47a2c8cc0c5ebb355acf7f3f5f623903a8101067ef56",968 "language": "Shell",969 "lines": 401,970 "truncated": false,971 "block": 8,972 "row": 9366973 },974 {975 "path": "core/regress_out.m",976 "sha256": "6ff8ee38ece133c85f922f5620949b84da89ff621e0a05abd3bd7bfe08acb9a6",977 "language": "MATLAB",978 "lines": 72,979 "truncated": false,980 "block": 6,981 "row": 10219982 },983 {984 "path": "core/replacenan.m",985 "sha256": "28741a6cd7ec577d9cc66d20dad329c48c056d0f1fb93494b88ad218bdd2641b",986 "language": "MATLAB",987 "lines": 9,988 "truncated": false,989 "block": 6,990 "row": 2748991 },992 {993 "path": "core/rmse.sh",994 "sha256": "99ae2de0434c094d529645361e4164eabd5b8bae3a2ddec7e41a9d3f80b9ef99",995 "language": "Shell",996 "lines": 112,997 "truncated": false,998 "block": 8,999 "row": 88021000 },1001 {1002 "path": "core/robustfov_macaque.sh",1003 "sha256": "37da29edf47b8c9c799416f5f699363462adf9c5f705159fab9a064cf5619556",1004 "language": "Shell",1005 "lines": 206,1006 "truncated": false,1007 "block": 8,1008 "row": 91601009 },1010 {1011 "path": "core/rotbvecs.sh",1012 "sha256": "bfd5305966d4f5b3f2f5df5574fcef9292b78325e3003c03afa00dcab9930501",1013 "language": "Shell",1014 "lines": 126,1015 "truncated": false,1016 "block": 8,1017 "row": 89841018 },1019 {1020 "path": "core/run_fixed.sh",1021 "sha256": "f78f27b1edbd953f0cac0ec9c8e2e9eb30c298ae0172de58b38a0b5322d410ee",1022 "language": "Shell",1023 "lines": 101,1024 "truncated": false,1025 "block": 8,1026 "row": 86721027 },1028 {1029 "path": "core/run_flex.sh",1030 "sha256": "d985d4b4d8c863144b1f9855737b3233d04596cbbad41173981929bc53fdf09d",1031 "language": "Shell",1032 "lines": 198,1033 "truncated": false,1034 "block": 8,1035 "row": 91591036 },1037 {1038 "path": "core/save_gifti.m",1039 "sha256": "8598f363d2a10c6ac3abc806f070cdd60bb48143bd79c3fdebd50e5b9ad5c23e",1040 "language": "MATLAB",1041 "lines": 183,1042 "truncated": false,1043 "block": 6,1044 "row": 161731045 },1046 {1047 "path": "core/saveimgfile.m",1048 "sha256": "847e105d5f79f5f7acb882fbe8a58fed561ea02ef02526cb541ea821389b47f4",1049 "language": "MATLAB",1050 "lines": 118,1051 "truncated": false,1052 "block": 6,1053 "row": 141351054 },1055 {1056 "path": "core/scatter_trendline.m",1057 "sha256": "cba5154fce6464ce5be0a558699f043e4f4fb0163773168df1d429db248597e7",1058 "language": "MATLAB",1059 "lines": 27,1060 "truncated": false,1061 "block": 6,1062 "row": 53591063 },1064 {1065 "path": "core/sm_compare2template.m",1066 "sha256": "eb07c7e3d971986ddd712afa76cd6f1e38e4e0efac5c54b934d25a45659d11ea",1067 "language": "MATLAB",1068 "lines": 161,1069 "truncated": false,1070 "block": 6,1071 "row": 148691072 },1073 {1074 "path": "core/sm_comparegroups.m",1075 "sha256": "f39f78e87be52aa98b228e7aeb6e2c1b7595cf01df2b3e5be3ecc69ab59f0edf",1076 "language": "MATLAB",1077 "lines": 275,1078 "truncated": false,1079 "block": 6,1080 "row": 167521081 },1082 {1083 "path": "core/sm_findpermutations.m",1084 "sha256": "7345d6b426e6c923a88886ec9159d4aee430fcb569dcd3b36282089cf871a607",1085 "language": "MATLAB",1086 "lines": 72,1087 "truncated": false,1088 "block": 6,1089 "row": 100621090 },1091 {1092 "path": "core/smape.sh",1093 "sha256": "ad9519fe14fc16103bf352a2c2707e8e071a4699ec6c3fc7a6e31725e837994d",1094 "language": "Shell",1095 "lines": 132,1096 "truncated": false,1097 "block": 8,1098 "row": 89331099 },1100 {1101 "path": "core/sort_CC_matrix.m",1102 "sha256": "d8da21894a43e8e93cf85ae05db5866e2149c0c8bf7d304954236e127b741819",1103 "language": "MATLAB",1104 "lines": 99,1105 "truncated": false,1106 "block": 6,1107 "row": 117741108 },1109 {1110 "path": "core/sortmatrixrows.m",1111 "sha256": "bd0fe9e1e6d2477b5b21cdf39621a1f91e94f56ac6babe9fb502eaa60c881067",1112 "language": "MATLAB",1113 "lines": 5,1114 "truncated": false,1115 "block": 6,1116 "row": 24951117 },1118 {1119 "path": "core/spider_regression.m",1120 "sha256": "7558c354859ef5352fb79dc119d89fedd4feb73adc12b6a2b12c6d304e268dd4",1121 "language": "MATLAB",1122 "lines": 85,1123 "truncated": false,1124 "block": 6,1125 "row": 124531126 },1127 {1128 "path": "core/spider_wedge.m",1129 "sha256": "fcd393552b95f50f1b84a30a04092df7c9c7179446bd2fc97d4be6968ba7defd",1130 "language": "MATLAB",1131 "lines": 738,1132 "truncated": false,1133 "block": 6,1134 "row": 189931135 },1136 {1137 "path": "core/ss_svds.m",1138 "sha256": "f6729d3fa04b4b9b7c76f00fb0a09b6fd9575cde3a3b73b3b7d686f60b021a9f",1139 "language": "MATLAB",1140 "lines": 46,1141 "truncated": false,1142 "block": 6,1143 "row": 80771144 },1145 {1146 "path": "core/strcontain.m",1147 "sha256": "8f675ce18c85dfecbafb260f7f46dbdde0302b31fe91808c5f72f3a4f41c0549",1148 "language": "MATLAB",1149 "lines": 27,1150 "truncated": false,1151 "block": 6,1152 "row": 51501153 },1154 {1155 "path": "core/strerase.m",1156 "sha256": "585d3eaaee4b8bf4ad0bd59d3b86889fe8ff1af4e62380f5b48d46929218e699",1157 "language": "MATLAB",1158 "lines": 23,1159 "truncated": false,1160 "block": 6,1161 "row": 49231162 },1163 {1164 "path": "core/strreplace.m",1165 "sha256": "ccf54ce2b9af9c59212f79120a3941965eec69d18676a1e7cb5bdf09073baedc",1166 "language": "MATLAB",1167 "lines": 24,1168 "truncated": false,1169 "block": 6,1170 "row": 51881171 },1172 {1173 "path": "core/struct_macaque.sh",1174 "sha256": "6b037bd864c953c8359c95734a2b087dae6e400132aaaaa86a28aa111eb5ecf2",1175 "language": "Shell",1176 "lines": 595,1177 "truncated": false,1178 "block": 8,1179 "row": 94041180 },1181 {1182 "path": "core/surf_cog.m",1183 "sha256": "188f64196ed2e621ba40740900e23ddfab46eec1eb75963d342df0259c785fe9",1184 "language": "MATLAB",1185 "lines": 168,1186 "truncated": false,1187 "block": 6,1188 "row": 148371189 },1190 {1191 "path": "core/surf_crosscorr.m",1192 "sha256": "b3ebd09f9c41e86e0754bffc5ccceff55d3a5e42fcc3c22d0d91c9081988b141",1193 "language": "MATLAB",1194 "lines": 77,1195 "truncated": false,1196 "block": 6,1197 "row": 115031198 },1199 {1200 "path": "core/swapdims.sh",