OpenScientificCodeRegistry/Database

1{2 "format": "oscr-script-manifest/1",3 "repository": "github.com/i2pc/flexutils-toolkit",4 "url": "https://github.com/I2PC/Flexutils-Toolkit",5 "host": "github.com",6 "commit": "dbe2ac22c40db4e4f66a5d1a97cf74abd8975aee",7 "license": "GPL-3.0",8 "license_confirmed_by": "license file LICENSE",9 "redistribution": "yes",10 "files": [11  {12   "path": "LICENSE",13   "sha256": "8ceb4b9ee5adedde47b31e975c1d90c73ad27b6b165a1dcd80c7c545eb65b903",14   "language": "License",15   "lines": 674,16   "truncated": false,17   "block": 1,18   "row": 223419  },20  {21   "path": "README.md",22   "sha256": "07d2be7ec1d9bc706ea1370b4da070f1fddb87809501110fffc541abf53f8b52",23   "language": "Text",24   "lines": 55,25   "truncated": false,26   "block": 18,27   "row": 1066328  },29  {30   "path": "deprecated/NMA/__init__.py",31   "sha256": "fb9b5b18eb9f5219baf90b1b23d3a50f22d8ac35e69088786f18595a1c48a946",32   "language": "Python",33   "lines": 27,34   "truncated": false,35   "block": 17,36   "row": 2067237  },38  {39   "path": "deprecated/NMA/anm.py",40   "sha256": "95bfc44b10d1a1d7b693c2c3efe52c73d788772060218000cb6bdab31988e038",41   "language": "Python",42   "lines": 80,43   "truncated": false,44   "block": 17,45   "row": 2544846  },47  {48   "path": "deprecated/NMA/eigtools.py",49   "sha256": "1934303e8fc0c9c173ffa08bd3f7b97b6e4f5da20c1f07ad4a49a64f9d238675",50   "language": "Python",51   "lines": 172,52   "truncated": false,53   "block": 17,54   "row": 3043455  },56  {57   "path": "deprecated/NMA/misctools.py",58   "sha256": "2cb1a1a3f7ef9fff2f2f011d772c86d0fe5c75c637095381482161088cf01b67",59   "language": "Python",60   "lines": 46,61   "truncated": false,62   "block": 17,63   "row": 2230264  },65  {66   "path": "deprecated/deep_elastic.py",67   "sha256": "564f340567697c71a42651fdcc29be5c723dce15dfa0df050f74aca6eb64c8fa",68   "language": "Python",69   "lines": 306,70   "truncated": false,71   "block": 18,72   "row": 151473  },74  {75   "path": "deprecated/deep_nma.py",76   "sha256": "f7c2f922b4128c753b32c99ba1670593b488b282346bb13dc8aef19bc4fd1af2",77   "language": "Python",78   "lines": 352,79   "truncated": false,80   "block": 18,81   "row": 277882  },83  {84   "path": "deprecated/deep_pose.py",85   "sha256": "509a071b26cce597ea54914e1b8c593bc5a2da3412fb1c67ca681f9c72a79cfb",86   "language": "Python",87   "lines": 597,88   "truncated": false,89   "block": 18,90   "row": 424491  },92  {93   "path": "deprecated/deep_pose_vae.py",94   "sha256": "158d4ce30e95798149bbece8cfa22c106de64fe1705796592b24b23c0e81761c",95   "language": "Python",96   "lines": 414,97   "truncated": false,98   "block": 18,99   "row": 3177100  },101  {102   "path": "deprecated/flexsiren_basis.py",103   "sha256": "018aa179013d6324f47bde1ff641a6e60bf3e1f66e21df825c73d2bd1db1aa12",104   "language": "Python",105   "lines": 1401,106   "truncated": false,107   "block": 18,108   "row": 5614109  },110  {111   "path": "deprecated/generator_deep_nma.py",112   "sha256": "5b3f975693fdce119557856882b706352c9cae1880802d3cb145771576f9bd8e",113   "language": "Python",114   "lines": 229,115   "truncated": false,116   "block": 17,117   "row": 32506118  },119  {120   "path": "deprecated/generator_deep_pose.py",121   "sha256": "c3132efce0b158dd6b7dbfb21c8d37f3890be24240644d1220086422d4ae65f8",122   "language": "Python",123   "lines": 216,124   "truncated": false,125   "block": 17,126   "row": 31865127  },128  {129   "path": "deprecated/generator_homo_siren.py",130   "sha256": "847b5e8fad857b5e0ccd906fadf9193f7a7b26da8e9cb2da96822a2961f337a6",131   "language": "Python",132   "lines": 167,133   "truncated": false,134   "block": 17,135   "row": 30421136  },137  {138   "path": "deprecated/homo_siren.py",139   "sha256": "68fd90269e24b5baae5f1f9eb72546ac71325a6533e2a86bfbef4de4ee88e687",140   "language": "Python",141   "lines": 406,142   "truncated": false,143   "block": 18,144   "row": 3068145  },146  {147   "path": "deprecated/predict_deep_nma.py",148   "sha256": "3d3f3eb213835f50de72d62422bfa73637563881708023453fe19d8b2ab662cf",149   "language": "Python",150   "lines": 135,151   "truncated": false,152   "block": 17,153   "row": 29074154  },155  {156   "path": "deprecated/predict_deep_pose.py",157   "sha256": "f07a4810f3d26c8afb885dc3c224803757bd1192bfc4da5060da36edb3180b48",158   "language": "Python",159   "lines": 129,160   "truncated": false,161   "block": 17,162   "row": 28308163  },164  {165   "path": "deprecated/predict_homo_siren.py",166   "sha256": "38cda302726a6b7cc963526fc06f57e3aa29c4e5c6ebd55f476f112992a9e1cc",167   "language": "Python",168   "lines": 118,169   "truncated": false,170   "block": 17,171   "row": 28044172  },173  {174   "path": "deprecated/predict_map_deep_nma.py",175   "sha256": "eba0d793a81505099a2292f1933d732ea2155a4d2e12cece36118c5fa8b06261",176   "language": "Python",177   "lines": 105,178   "truncated": false,179   "block": 17,180   "row": 26617181  },182  {183   "path": "deprecated/train_deep_elastic.py",184   "sha256": "8caeac5b30f2f231fcaccc30d9de3fedf3d2cb5aec1d699fd70e9f83193b1e22",185   "language": "Python",186   "lines": 122,187   "truncated": false,188   "block": 17,189   "row": 28097190  },191  {192   "path": "deprecated/train_deep_nma.py",193   "sha256": "29aa6490d39c76361a2186ea6fb2cdbd4824b00ffaf186f12ed8b7e622ad4639",194   "language": "Python",195   "lines": 186,196   "truncated": false,197   "block": 17,198   "row": 31990199  },200  {201   "path": "deprecated/train_deep_pose.py",202   "sha256": "c03068c8b4fa04318b3fc3dd1efdced3bb03bdc8da2b7106eba7adfcce2b7438",203   "language": "Python",204   "lines": 286,205   "truncated": false,206   "block": 18,207   "row": 1620208  },209  {210   "path": "deprecated/train_homo_siren.py",211   "sha256": "540b26f1c0b017b47ac33073a2a59c5368c94e3bd1740445fc8f5dcd62baf594",212   "language": "Python",213   "lines": 273,214   "truncated": false,215   "block": 18,216   "row": 1239217  },218  {219   "path": "install.sh",220   "sha256": "098e9397e1d1a04ff94174ed4fe024d436d5f43232d2a418b7075f124af3363c",221   "language": "Shell",222   "lines": 122,223   "truncated": false,224   "block": 18,225   "row": 10021226  },227  {228   "path": "install_open3d.sh",229   "sha256": "e6f2864281faceb1cdea5f7cdc587e4bd19ee0c66a540ec9ad7d9b7ea3607370",230   "language": "Shell",231   "lines": 210,232   "truncated": false,233   "block": 18,234   "row": 10193235  },236  {237   "path": "tensorflow_toolkit/__init__.py",238   "sha256": "3f571bece7e303386545d6ac6a2e5b52c9c995eae1c69d0246bc7d9f36ad3a0f",239   "language": "Python",240   "lines": 27,241   "truncated": false,242   "block": 17,243   "row": 20663244  },245  {246   "path": "tensorflow_toolkit/build.py",247   "sha256": "e58e68654d76f9494c14c0b8fbecfbdef328f39351dd200afed2cc733478832c",248   "language": "Python",249   "lines": 275,250   "truncated": false,251   "block": 18,252   "row": 1666253  },254  {255   "path": "tensorflow_toolkit/datasets/__init__.py",256   "sha256": "59ff37bd78a51b5b887d2ec81e56040ef02ac6943d002832a81843587b298004",257   "language": "Python",258   "lines": 25,259   "truncated": false,260   "block": 17,261   "row": 20590262  },263  {264   "path": "tensorflow_toolkit/datasets/dataset_template.py",265   "sha256": "5fb02e671a6924a5929af665776692a98f832ead002da6e616fdb40abed1cb3b",266   "language": "Python",267   "lines": 81,268   "truncated": false,269   "block": 17,270   "row": 24487271  },272  {273   "path": "tensorflow_toolkit/generators/__init__.py",274   "sha256": "e84e7eb001e46c2e6f9df7ee6902b43f171713f6d8fd8040b7a1bb640987cb05",275   "language": "Python",276   "lines": 25,277   "truncated": false,278   "block": 17,279   "row": 20597280  },281  {282   "path": "tensorflow_toolkit/generators/generator_flex_consensus.py",283   "sha256": "83c9d5ab25de730f19f9535d8d544a1c79d56af4bca8fa2a2c396907097f9bd9",284   "language": "Python",285   "lines": 325,286   "truncated": false,287   "block": 18,288   "row": 1575289  },290  {291   "path": "tensorflow_toolkit/generators/generator_flexsiren.py",292   "sha256": "c92bb42bbbe2d863d9a3f80beb3753ea7f85ff21af1fab92fdfadd782b813892",293   "language": "Python",294   "lines": 522,295   "truncated": false,296   "block": 18,297   "row": 3707298  },299  {300   "path": "tensorflow_toolkit/generators/generator_het_siren.py",301   "sha256": "415c77bfa2c7aed9c18ad94da5d5c9c8514ffe1bccbbdae880e29fcc66b68d95",302   "language": "Python",303   "lines": 587,304   "truncated": false,305   "block": 18,306   "row": 4072307  },308  {309   "path": "tensorflow_toolkit/generators/generator_reconsiren.py",310   "sha256": "e4cbc8049b92cf44fbe8912dffe438e90823faef3c99115b00403c005b391c3a",311   "language": "Python",312   "lines": 202,313   "truncated": false,314   "block": 17,315   "row": 31267316  },317  {318   "path": "tensorflow_toolkit/generators/generator_template.py",319   "sha256": "f7fb1454c3c216e512b70c6644fd66dcd41dc5057d335262be087a5a694916fd",320   "language": "Python",321   "lines": 615,322   "truncated": false,323   "block": 18,324   "row": 4096325  },326  {327   "path": "tensorflow_toolkit/generators/generator_zernike3deep.py",328   "sha256": "0b4f92de26a753d5af5d9d16d201979b9de51934d3277a0337c0473723a9bafb",329   "language": "Python",330   "lines": 387,331   "truncated": false,332   "block": 18,333   "row": 2527334  },335  {336   "path": "tensorflow_toolkit/layers/__init__.py",337   "sha256": "e84e7eb001e46c2e6f9df7ee6902b43f171713f6d8fd8040b7a1bb640987cb05",338   "language": "Python",339   "lines": 25,340   "truncated": false,341   "block": 17,342   "row": 20597343  },344  {345   "path": "tensorflow_toolkit/layers/cbam.py",346   "sha256": "6fcec9ff94cff46e0427a95a941f03e762d0805d665473bb1c62d89abcfd0f1e",347   "language": "Python",348   "lines": 327,349   "truncated": false,350   "block": 18,351   "row": 1651352  },353  {354   "path": "tensorflow_toolkit/layers/filter_stack.py",355   "sha256": "199dfe347d9f8f7b62c0ebcff4eea396af75cd64e9ba889c372f1d85622a7d3c",356   "language": "Python",357   "lines": 67,358   "truncated": false,359   "block": 17,360   "row": 24167361  },362  {363   "path": "tensorflow_toolkit/layers/residue_conv2d.py",364   "sha256": "348c55c058d9f7a1e957991a06cfbede306943d0c5fb2eae6e0fd10c87ab502a",365   "language": "Python",366   "lines": 74,367   "truncated": false,368   "block": 17,369   "row": 24351370  },371  {372   "path": "tensorflow_toolkit/layers/sampling.py",373   "sha256": "c05a35a82ca03b4ae0594f6c7af396b8b17ffffe7296a2ced3760a6a24ef9f78",374   "language": "Python",375   "lines": 38,376   "truncated": false,377   "block": 17,378   "row": 21481379  },380  {381   "path": "tensorflow_toolkit/layers/siren.py",382   "sha256": "2eca44ea9b0387c809bc64fc43420ad4f11a32cebf530a21d952c0bdb90b5b69",383   "language": "Python",384   "lines": 216,385   "truncated": false,386   "block": 17,387   "row": 31196388  },389  {390   "path": "tensorflow_toolkit/layers/siren_keras_3.py",391   "sha256": "28d7e38219bed7f70a796a2f776e0c262ca4a440033849e1ad5266d9f0899c4b",392   "language": "Python",393   "lines": 229,394   "truncated": false,395   "block": 17,396   "row": 31678397  },398  {399   "path": "tensorflow_toolkit/networks/__init__.py",400   "sha256": "e84e7eb001e46c2e6f9df7ee6902b43f171713f6d8fd8040b7a1bb640987cb05",401   "language": "Python",402   "lines": 25,403   "truncated": false,404   "block": 17,405   "row": 20597406  },407  {408   "path": "tensorflow_toolkit/networks/flex_consensus.py",409   "sha256": "39200dc7657955e6114f33dbe12026ef8716276cbd0c558a5ffd7652bcd8cfda",410   "language": "Python",411   "lines": 264,412   "truncated": false,413   "block": 18,414   "row": 577415  },416  {417   "path": "tensorflow_toolkit/networks/flexsiren.py",418   "sha256": "a5e520d350ad000b9b68fa756bda8cb293ea49fefaef996d910df047f7437056",419   "language": "Python",420   "lines": 1150,421   "truncated": false,422   "block": 18,423   "row": 5450424  },425  {426   "path": "tensorflow_toolkit/networks/het_siren.py",427   "sha256": "1c2e6bd76960e1f4bd747b9e19fd52db46fbe487992ed5dffc309e09f1661165",428   "language": "Python",429   "lines": 1371,430   "truncated": false,431   "block": 18,432   "row": 5582433  },434  {435   "path": "tensorflow_toolkit/networks/reconsiren.py",436   "sha256": "63dbde0f9bf7c90257976c341480be865b14d42cba2c1266c3f142fe613c17db",437   "language": "Python",438   "lines": 1568,439   "truncated": false,440   "block": 18,441   "row": 5576442  },443  {444   "path": "tensorflow_toolkit/networks/zernike3deep.py",445   "sha256": "d8b40748b7ae47f9fa995cc5d82f7cc660bfcaaf4f376f00717cea03e48467ab",446   "language": "Python",447   "lines": 766,448   "truncated": false,449   "block": 18,450   "row": 4988451  },452  {453   "path": "tensorflow_toolkit/scripts/__init__.py",454   "sha256": "e84e7eb001e46c2e6f9df7ee6902b43f171713f6d8fd8040b7a1bb640987cb05",455   "language": "Python",456   "lines": 25,457   "truncated": false,458   "block": 17,459   "row": 20597460  },461  {462   "path": "tensorflow_toolkit/scripts/compute_distance_matrix_zernike3deep.py",463   "sha256": "fe981f5af226e9933027d5e7591d183a2a423bafb09797e83f3017deaf87ed81",464   "language": "Python",465   "lines": 167,466   "truncated": false,467   "block": 17,468   "row": 31805469  },470  {471   "path": "tensorflow_toolkit/scripts/convect_map_flexsiren.py",472   "sha256": "ba6c2cbfc6571aeefb31ebe969e52dde5341c9436cbf8865b3d5c6cef9d57e9b",473   "language": "Python",474   "lines": 105,475   "truncated": false,476   "block": 17,477   "row": 27335478  },479  {480   "path": "tensorflow_toolkit/scripts/find_optimal_clusters.py",481   "sha256": "41d5366718df3aa1903768c381748d37b91aed3b56b7137655385e4e2f925b1c",482   "language": "Python",483   "lines": 92,484   "truncated": false,485   "block": 17,486   "row": 25655487  },488  {489   "path": "tensorflow_toolkit/scripts/predict_flex_consensus.py",490   "sha256": "fbc73b5ceaeeb4fb576134720649d8868a88bacb6e8333b12ad785e9cef53495",491   "language": "Python",492   "lines": 148,493   "truncated": false,494   "block": 17,495   "row": 29060496  },497  {498   "path": "tensorflow_toolkit/scripts/predict_flexsiren.py",499   "sha256": "1f0a4864d9365b517aeb7249726466955a99235d11610f0dda5b4bbbcd604df5",500   "language": "Python",501   "lines": 155,502   "truncated": false,503   "block": 17,504   "row": 29982505  },506  {507   "path": "tensorflow_toolkit/scripts/predict_het_siren.py",508   "sha256": "3a45832cd30ec0af437c5b22f5a7be1877c1a7452081f08a2ff593c1bed9f3d5",509   "language": "Python",510   "lines": 167,511   "truncated": false,512   "block": 17,513   "row": 31137514  },515  {516   "path": "tensorflow_toolkit/scripts/predict_map_het_siren.py",517   "sha256": "ec2684c97996110c10fb4e10b84f837986e8f3b874bee9e1d009d1c2f0d523a8",518   "language": "Python",519   "lines": 118,520   "truncated": false,521   "block": 17,522   "row": 28246523  },524  {525   "path": "tensorflow_toolkit/scripts/predict_particles_het_siren.py",526   "sha256": "0a1215ed9259ee4a879b53218c8ec98586b0a5d9a14fe54c6db5b903c9d4202a",527   "language": "Python",528   "lines": 158,529   "truncated": false,530   "block": 17,531   "row": 30435532  },533  {534   "path": "tensorflow_toolkit/scripts/predict_reconsiren.py",535   "sha256": "5ef88424c48c75e8f9238cf90064c6f31a2785c86e6a3818693df6f1db9c8175",536   "language": "Python",537   "lines": 144,538   "truncated": false,539   "block": 17,540   "row": 29244541  },542  {543   "path": "tensorflow_toolkit/scripts/predict_zernike3deep.py",544   "sha256": "05fcdaa130be2b8343e167881c3e4dd51b18d9a0b7d546d5c97a15e1ca11f87d",545   "language": "Python",546   "lines": 165,547   "truncated": false,548   "block": 17,549   "row": 30433550  },551  {552   "path": "tensorflow_toolkit/scripts/train_flex_consensus.py",553   "sha256": "b9c9a2b78b2a267ede1b54907a47f707ad09fcdd5cf1372d001840ae64d720f0",554   "language": "Python",555   "lines": 225,556   "truncated": false,557   "block": 17,558   "row": 32500559  },560  {561   "path": "tensorflow_toolkit/scripts/train_flexsiren.py",562   "sha256": "9c12fdd61788eb3872e8c1e781cc634380ac79eaf52f61f918c371dcfb3ff225",563   "language": "Python",564   "lines": 245,565   "truncated": false,566   "block": 18,567   "row": 1252568  },569  {570   "path": "tensorflow_toolkit/scripts/train_het_siren.py",571   "sha256": "124ebd44a6cdc61024a31dbb8235dc6b01e608def4f190cce2846f6f3911cfdb",572   "language": "Python",573   "lines": 248,574   "truncated": false,575   "block": 18,576   "row": 1300577  },578  {579   "path": "tensorflow_toolkit/scripts/train_reconsiren.py",580   "sha256": "9754df89879da081177f0d52619fb2c2f2f4e0a8a42cc3f3cf35c6bafe5fe989",581   "language": "Python",582   "lines": 290,583   "truncated": false,584   "block": 18,585   "row": 1950586  },587  {588   "path": "tensorflow_toolkit/scripts/train_zernike3deep.py",589   "sha256": "b818fa577f9ae5e4f2541bf91803c8407c687c0fcbfa44edcc3e9392dcde7080",590   "language": "Python",591   "lines": 232,592   "truncated": false,593   "block": 18,594   "row": 780595  },596  {597   "path": "tensorflow_toolkit/utils/Clustering/__init__.py",598   "sha256": "11796f9f25cc5d5a3055c21253c771a86dbad66bce5fb64967e580762a71d561",599   "language": "Python",600   "lines": 28,601   "truncated": false,602   "block": 17,603   "row": 20749604  },605  {606   "path": "tensorflow_toolkit/utils/Clustering/methods.py",607   "sha256": "9420c6800032c935d8ef2da3a5f9b80d50db303ae88db9bcb06c586e870003e5",608   "language": "Python",609   "lines": 183,610   "truncated": false,611   "block": 17,612   "row": 30091613  },614  {615   "path": "tensorflow_toolkit/utils/Clustering/utils.py",616   "sha256": "32700934310c38e8b111f579a913fbb65380fa4158f21c96afb370a7954aa862",617   "language": "Python",618   "lines": 30,619   "truncated": false,620   "block": 17,621   "row": 20955622  },623  {624   "path": "tensorflow_toolkit/utils/__init__.py",625   "sha256": "67f5a71212d8380c9128d2dc3df66ee3ccf6a882bbf71dc80ccffff82f065cb2",626   "language": "Python",627   "lines": 28,628   "truncated": false,629   "block": 17,630   "row": 20784631  },632  {633   "path": "tensorflow_toolkit/utils/utils.py",634   "sha256": "fad203ca4481b4a0bca8e949e18fdf22bc20b6a72c5391fc8aca714f79e45492",635   "language": "Python",636   "lines": 392,637   "truncated": false,638   "block": 18,639   "row": 1900640  },641  {642   "path": "tensorflow_toolkit/utils/utils_zernike3d.py",643   "sha256": "06b94b3ce11556919892ee1b59749f99835b0a0a96118be34a257a0eaac2b24e",644   "language": "Python",645   "lines": 616,646   "truncated": false,647   "block": 18,648   "row": 5125649  },650  {651   "path": "tensorflow_toolkit/utils/utils_zernike3d_tf.py",652   "sha256": "ab10b4c9c54790028c0fa52580660a1e4d6fd0a6096bad015e2ee19d3bba3ed1",653   "language": "Python",654   "lines": 588,655   "truncated": false,656   "block": 18,657   "row": 5117658  }659 ]660}