prakhya15/human-microbe-dataset
Human Microbe Evidence Dataset Multi-source microbial evidence dataset focused on taxa associated with human infection, disease, clinical literature, and pathogen genomic evidence. Current release This is an intermediate checkpoint of the pipeline. Current stage: PubMed discovery + NCBI Taxonomy + disease evidence + ChEMBL + NCBI Pathogen Detection indexing Important interpretation PubMed literature signals represent evidence of association and do… See the full description on the dataset page: https://huggingface.co/datasets/prakhya15/human-microbe-dataset.
Human Microbe Evidence Dataset
Multi-source microbial evidence dataset focused on taxa associated with human infection, disease, clinical literature, and pathogen genomic evidence.
Current release
This is an intermediate checkpoint of the pipeline.
Current stage:
PubMed discovery + NCBI Taxonomy + disease evidence + ChEMBL + NCBI Pathogen Detection indexing
Important interpretation
PubMed literature signals represent evidence of association and do not by themselves establish microbial disease causality.
ChEMBL is a bioactivity and target database and is used here as supporting evidence rather than as a pathogen catalogue.
NCBI Pathogen Detection is used primarily for genome, isolate, AMR, virulence and related pathogen metadata.
Data organization
The repository contains separate CSV tables rather than forcing all information into one very wide table.
Generated: 2026-09-16T01:38:11.198470+00:00