DNA
Datasets
All datasets matching “DNA”annotators
Genomic Variant Annotators
Curated genomic variant annotation modules from the DNA-seq project.
Overview
This dataset contains pre-computed annotation data for genetic variants, organized by module:
Module
Description
Files
longevitymap
Longevity-associated variants
annotations.parquet, studies.parquet, weights.parquet
Schema
annotations.parquet
Variant-level facts linking rsIDs to genes and phenotypes.
rsid: dbSNP… See the full description on the dataset page: https://huggingface.co/datasets/just-dna-seq/annotators.dna_rendering_processed
DNA-Rendering-Processed Dataset
Project Page | Paper | Code | Model
To enable Diffuman4D model training, we meticulously process the DNA-Rendering dataset by recalibrating camera parameters, optimizing image color correction matrices (CCMs), predicting foreground masks, and estimating human skeletons.
To promote future research in the field of human-centric 3D/4D generation, we have open-sourced our re-annotated labels for the DNA-Rendering dataset in this repo, which includes… See the full description on the dataset page: https://huggingface.co/datasets/krahets/dna_rendering_processed.zoonomia-v1-v3_ccre_non_promoter
bolinas-dna/zoonomia-v1-v3_ccre_non_promoter
Per-anchor region-type partition of the cross-mammal training set
bolinas-dna/zoonomia-v1-v1,
restricted to anchors labelled ccre_non_promoter by the
snakemake/zoonomia_projection_dataset pipeline
(commit 2ab868a2f1d4).
Region label (ccre_non_promoter)
ENCODE cCRE V4 non-promoter classes — cre_class != "PLS" (so: dELS, pELS, CA, CA-CTCF, CA-TF, CA-H3K4me3, TF), extended by 500 bp on each side. PLS is excluded because… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/zoonomia-v1-v3_ccre_non_promoter.genomes-v5-genome_set-animals-intervals-v5_255_128
bolinas-dna/genomes-v5-genome_set-animals-intervals-v5_255_128
Animals CDS (v5) sequences — 255 bp DNA windows
for genomic language model pretraining.
Part of the bolinas-dna/genomes-v5 training-dataset family produced by the
snakemake/training_dataset pipeline (commit
8db58254831f). Each repo in the family is one
(genome_set, region-recipe) combination.
Size
242,334,716 sequences across 64 data/train/*.jsonl.zst shards
(reverse complements included). This is an… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-animals-intervals-v5_255_128.genomes-v5-genome_set-animals-intervals-v1_255_128
bolinas-dna/genomes-v5-genome_set-animals-intervals-v1_255_128
Animals promoters (v1) sequences — 255 bp DNA windows
for genomic language model pretraining.
Part of the bolinas-dna/genomes-v5 training-dataset family produced by the
snakemake/training_dataset pipeline (commit
8db58254831f). Each repo in the family is one
(genome_set, region-recipe) combination.
Size
68,286,166 sequences across 64 data/train/*.jsonl.zst shards
(reverse complements included). This is… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-animals-intervals-v1_255_128.genomes-v5-genome_set-animals_order204-intervals-v5_255_128
bolinas-dna/genomes-v5-genome_set-animals_order204-intervals-v5_255_128
204 animals (one per order) CDS (v5) sequences — 255 bp DNA windows
for genomic language model pretraining.
Part of the bolinas-dna/genomes-v5 training-dataset family produced by the
snakemake/training_dataset pipeline (commit
main). Each repo in the family is one
(genome_set, region-recipe) combination.
Size
101,114,252 sequences across 64 data/train/*.jsonl.zst shards
(reverse complements… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/genomes-v5-genome_set-animals_order204-intervals-v5_255_128.