msa
Datasets
All datasets matching “msa”MSA_PretrainData
MSA Pretrain Data
Retrieval-style pretraining corpora. Each subset is split into two parts:
file
columns
meaning
<subset>/queries/*.parquet
question, answer, reference_ids: list<int64>, labels: list<int64>
query, plus row indices into the subset's reference table
<subset>/references/*.parquet
value: string
the reference/memory passage text
reference_ids are the candidate pool for a query; labels are the positive(s).
Both are global row indices into the subset's… See the full description on the dataset page: https://huggingface.co/datasets/Anoy123423123/MSA_PretrainData.gpn-msa-hg38-scores
GPN-MSA predictions for all possible SNPs in the human genome (~9 billion)
For more information check out our paper and repository.
Querying specific variants or genes
Install the latest tabix:In your current conda environment (might be slow):conda install -c bioconda -c conda-forge htslib=1.18
or in a new conda environment:conda create -n tabix -c bioconda -c conda-forge htslib=1.18
conda activate tabix
Query a specific region (e.g. BRCA1), from the remote file:… See the full description on the dataset page: https://huggingface.co/datasets/songlab/gpn-msa-hg38-scores.ar-quran-hadith14books-MSA
ar-quran-hadith14books-MSA
Arabic speech for both primary sources of Islam — Quran and Hadith — plus cleaned general
Modern Standard Arabic, under one construction pipeline and one text convention.
ASR errors on sacred text are not ordinary errors: a plausible-sounding substitution can alter
the meaning of scripture, and because chatbots, search and summarizers increasingly answer from
transcriptions rather than from audio, such an error propagates silently. Quranic recitation… See the full description on the dataset page: https://huggingface.co/datasets/Dr-AliGomaa/ar-quran-hadith14books-MSA.us-layoffs-by-metro-area-msa-warn-act
US layoffs by metro area: 54,225 WARN notices mapped to 765 metro and micro areas
Rebuilt 2026-09-24. 765 of the 935 US core-based statistical areas carry at least one
layoff notice on record — 361 metropolitan and 404 micropolitan.
Nobody hires, sells or reports by county. A recruiter covers Austin; an account team books the
Phoenix metro; a reporter writes Bay Area layoffs. State agencies publish neither — they publish
the site of a layoff as free text in 48 different… See the full description on the dataset page: https://huggingface.co/datasets/APProjects/us-layoffs-by-metro-area-msa-warn-act.human-proteome-wide-msa
Human Proteome ColabFold MSAs
This dataset contains ColabFold/MMseqs2 multiple sequence alignments and AlphaFold 3 JSON inputs for the human proteome query set.
Contents
a3m/shard-*/: one A3M file per protein accession, sharded to stay below repository directory file limits.
af3_json/shard-*/: one AlphaFold 3 JSON file per protein accession, sharded to stay below repository directory file limits.
manifest.tsv: tab-separated index with accession, metadata… See the full description on the dataset page: https://huggingface.co/datasets/LiteFold/human-proteome-wide-msa.RBC_MSA