multimolecule
archiveii
ArchiveII
ArchiveII is a dataset of RNA sequences and their secondary structures, widely used in RNA secondary structure prediction benchmarks.
ArchiveII contains 2975 RNA samples across 10 RNA families, with sequence lengths ranging from 28 to 2968 nucleotides.
This dataset is frequently used to evaluate RNA secondary structure prediction methods, including those that handle both pseudoknotted and non-pseudoknotted structures.
It is considered complementary to the RNAStrAlign… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/archiveii.rnacentral
RNAcentral
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases representing a broad range of organisms and RNA types.
The development of RNAcentral is coordinated by European Bioinformatics Institute and is supported by Wellcome. Initial funding was provided by BBSRC.
Disclaimer
This is an UNOFFICIAL release of the RNAcentral by The… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/rnacentral.bprna-spot
bpRNA-spot
bpRNA-spot is a collection of the datasets used by SPOT-RNA for RNA secondary structure prediction.
The dataset is released as a composite repository, bpRNA-spot, and three numbered component repositories:
bpRNA-spot-0: the initial bpRNA split, TR0, VL0, and TS0.
bpRNA-spot-1: the PDB transfer-learning split, TR1, VL1, and TS1.
bpRNA-spot-2: the NMR-only evaluation split, TS2.
bpRNA-spot concatenates the components in order:
train: TR0 + TR1
validation: VL0 + VL1
test:… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/bprna-spot.bprna-new
bpRNA-new
bpRNA-new is a database of single molecule secondary structures annotated using bpRNA.
bpRNA-new is a dataset of RNA families from Rfam 14.2, designed for cross-family validation to assess generalization capability.
It focuses on families distinct from those in bpRNA-1m, providing a robust benchmark for evaluating model performance on unseen RNA families.
Disclaimer
This is an UNOFFICIAL release of the bpRNA-new by Kengo Sato, et al.
The team releasing… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/bprna-new.bprna-90
bpRNA-1m
bpRNA-1m is a database of single molecule secondary structures annotated using bpRNA.
Disclaimer
This is an UNOFFICIAL release of the bpRNA-1m by Center for Quantitative Life Sciences of the Oregon State University.
The team releasing bpRNA did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.
Example Entry
id
sequence
secondary_structure
structural_annotation
functional_annotation… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/bprna-90.bprna
bpRNA-1m
bpRNA-1m is a database of single molecule secondary structures annotated using bpRNA.
Disclaimer
This is an UNOFFICIAL release of the bpRNA-1m by Center for Quantitative Life Sciences of the Oregon State University.
The team releasing bpRNA did not write this dataset card for this dataset so this dataset card has been written by the MultiMolecule team.
Example Entry
id
sequence
secondary_structure
structural_annotation
functional_annotation… See the full description on the dataset page: https://huggingface.co/datasets/multimolecule/bprna.