ncRNA
Datasets
All datasets matching “ncRNA”zoonomia-v1-v3_ncrna_exon
bolinas-dna/zoonomia-v1-v3_ncrna_exon
Per-anchor region-type partition of the cross-mammal training set
bolinas-dna/zoonomia-v1-v1,
restricted to anchors labelled ncrna_exon by the
snakemake/zoonomia_projection_dataset pipeline
(commit 2ab868a2f1d4).
Region label (ncrna_exon)
Non-coding-RNA exon — every Ensembl r115 exon that is not part of a protein-coding transcript (get_exons(ann) − get_ensembl_protein_coding_exons(ann)). No biotype or quality filter, so this… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/zoonomia-v1-v3_ncrna_exon.vertebrate-v1-ncrna_exon
marin-dna/vertebrate-v1-ncrna_exon
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment and UCSC hg38 MultiZ 100-way alignment. This
draft covers the ncrna_exon region cohort with all species
scope and preserves source FASTA/2bit letter case.
Anchor eligibility uses the pipeline's pinned phyloP conservation filter.
Sequence case is independent of that filter: lowercase bases preserve source
repeat masking, uppercase bases preserve source… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/vertebrate-v1-ncrna_exon.phylop-uniform-v1-ncrna-exon
marin-dna/phylop-uniform-v1-ncrna-exon
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment and UCSC hg38 MultiZ 100-way alignment.
This draft covers the ncrna_exon region cohort with all species scope and preserves source FASTA/2bit letter case.
Non-human rows project only the central human nucleotide and extract the 255 bp target window centered on its unique mapped locus.
Anchor eligibility uses the pipeline's pinned phyloP conservation… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/phylop-uniform-v1-ncrna-exon.rag-five-regions-v1-ncrna
marin-dna/rag-five-regions-v1-ncrna
Human-anchored RAG documents for the ncrna region.
The producing workflow owns source identities, projected coordinates, and sequence provenance at s3://oa-bolinas/snakemake/vertebrate_projection_dataset/results/rag-five-regions-v1/6b1593c274a886d20f5c0ddf3712916d446f5fed/10ba63bc375ba912909b82cda68143df4677431124fc8e15f6ac42850ce0fca6/full/rag.
The publishing workflow owns public shard row mappings and release checksums at… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/rag-five-regions-v1-ncrna.gpn-star-p-uniform-v1-ncrna-exon
marin-dna/gpn-star-p-uniform-v1-ncrna-exon
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment and UCSC hg38 MultiZ 100-way alignment.
This draft covers the ncrna_exon region cohort with all species scope and preserves source FASTA/2bit letter case.
Non-human rows project only the central human nucleotide and extract the 255 bp target window centered on its unique mapped locus.
Anchor eligibility uses calibrated entropy from the primate… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/gpn-star-p-uniform-v1-ncrna-exon.zoonomia-v1-v4_ncrna_exon
bolinas-dna/zoonomia-v1-v4_ncrna_exon
Per-anchor region-type partition of the cross-mammal training set
bolinas-dna/zoonomia-v1-v1,
restricted to anchors labelled ncrna_exon by the v4 region labeler
(snakemake/zoonomia_projection_dataset pipeline,
commit 4729d06d576f).
v4 re-derives the v3 partition with the labeling scheme resolved in
issue #221: base-pair
priority + window majority, a protein-coding-only TSS band, and
ccre_flank=0. See the pipeline README's "v4 region-type… See the full description on the dataset page: https://huggingface.co/datasets/marin-dna/zoonomia-v1-v4_ncrna_exon.